Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3389 ATGAATGCAGTTAAAGAGAAAAAGAAATCCCATGACAGGGCACTAAAGAAAGGCAACTGCTGTATTTGCTATGAGATGAAAGTTGACTCACTTTTATACAGATGTGGGCATATGTGTGCTTGTCTGAAGTGCGCTAATGAGTTGCAATGGAACAGTGGGAAATGTCCAATATGTCGAGCTCCAATAGTAGATGTTGTGAGAGTATATTTGGATGCATAG 219 0.3973 MNAVKEKKKSHDRALKKGNCCICYEMKVDSLLYRCGHMCACLKCANELQWNSGKCPICRAPIVDVVRVYLDA 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3389 72 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 71 IPR013083 -
Glsi11g3389 72 PANTHER BNAC05G24000D PROTEIN 5 71 - -
Glsi11g3389 72 ProSiteProfiles Zinc finger RING-type profile. 20 59 IPR001841 -
Glsi11g3389 72 Pfam Zinc finger, C3HC4 type (RING finger) 17 64 - -
Glsi11g3389 72 SUPERFAMILY RING/U-box 11 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3389 Glsi-ChrGlsi11 54975739 54976046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3389 20 72 C3H Transcription Factor Family AT3G06140 39.623 2.36e-11 55.5