Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3386 ATGGCAATTGCAGTGAGAATTCCAACACAAGAAATTTTGTTGCTCTTTTGTTTTTCTTCGGTGTTAGTCCTTTGCCATGGCAAGTTAAATAGTGAGTCAACGTTGAGAGTGCTTCTGGAGGCGAAGAAATCGTTTGGACAGGACCCAGAAAATGTTTTGAGTGATTGGTCAGAAGCCAACACGGACTACTGTAGTTGGAGAGGCGTCTCATGTGGGTTGAACTCCGTGGATGGCTCAATGGTAGTAGACGGACTCAACCTTTCTGACTCCTCGCTCACTGGGTCAATATCACCCTCACTCGGTCGTCTGCAAAACCTGCTCCACCTTGATCTTTCTTCTAACAGCCTCACTGGTCCCATCCCACCTAATCTCTCTAACCTTTCTTCTTTGGAATCTCTGCTTCTCTTCTCTAACCAACTCACGGGTCATATTCCCACTGAGTTTAGCTCGCTCACGAGTCTTCGAGTCTTGCGAATCGGGGACAATGCACTTACGGGTGCCATTCCTGTGTCTTTCGGGAATCTGGTTAATCTCGTGACCCTTGGTTTGGCCTCCTGCAGTCTCACCGGTTCCATTCCATCAGAACTCGGACAACTCAGCCGGATTGAGAATCTGATTTTACAAGCAAATGAACTCATGGGTCCGATTCCGGCCGAGTTGGCAAACTGTTCAAGCCTCACCGTTTTCACGGCTGCTAACAACAGACTGAATGACTCCTTCTCGAGTGAACTGGGTAAGCTTAAGAATCTCCAACTTCTCAACGTTGCCAACAACAGCATATCAGGGGAGGTTCCAAGTCAACTCAGTAATCTGAGTAATCTAGTTTATCTGAACTTCATGGGAAACCAACTTGAAGGTACTATTCCTCCGTCTATAGCTCAACTGGGTAATCTTCAAAATCTGGACTTGTCATTGAACAAACTCAGTGGGGGAATTCCAGAGGAAATGGGCAACATGAGTCAGTTAACGTACCTGGTTCTGTCTGGCAATCACCTCTCTGGGATCATACCAAGAGCCATTTGCTCCAATGCGACAAGTTTGGAGCACTTGATGCTGTCAGAGATCGGACTTTCTGGTGAGATTCCAGCTGAGTTAAGTCAATGCCAATCACTAAAACAACTTGATTTGTCAAACAATTCGCTCAATGGATCGATACCTCTCGAACTTTATGGGTTGATTGGGTTAACTGATCTCTTGCTTAACAACAACAGCTTGGTTGGTTCAATCTCTCCCTTCATAGGGAATCTCAGTAACTTGCAGACACTTGCATTATTCCACAACAATTTACAGGGTGCTCTGCCAATAGAGATTGGGATGCTTGGAAAGCTGGAAATATTGTACCTTTATGATAATCAATTATCAGGGGAAATACCTATAGAAATTGGTAACTGTTCGAGCTTGCAAAAGATTGATTTTTTTGGAAACCACTTCGGTGGGCAAATTCCCATCACTATTGGAAGGCTTAAAGAGTTGAATTTCCTTCATCTCAGGCAGAATGAGCTAGTGGGTGAGATTCCGGCCACCCTGGGTAATTGTCATAAGCTAACTATCCTGGATTTGGCAGACAATCAGCTCACGGGTGGCATTCCTGAGACTTTTGGGTCCCTGAGAGCTTTGGAGCAGCTCATGCTCTATAACAACTCCCTTGAAGGTAATCTCCCTCACCAACTGATAAATGTGGCGAATTTGACGAGGGTGAATCTTTCGAAAAACAGATTGAATGGTAGTATAGGTGTATTGTGTGTCTCCCGATCTTTTCTATCTTTTGATATCACCAACAATGCATTTGACAGAGAAATTCCGCCCCAGCTGGGAAATTCACCCTCCCTTGAGAGGCTGAGATTAGGTAACAACAACTTTTCGGGGGAAATACCAAGGTCATTGGGAAAAATCCATGAACTGTCTTTGTTAGACCTCTCTGGAAATTCGCTCAATGGACCAGTACCAGCTGAGCTTTCTTTGTGCAAGAAACTAGCTCATATTGATCTGAACAATAACTTTCTATCTGGACCAATACCATCATGGCTTGGAAGCTTACCACTGCTGGGAGAGCTTAAGCTCTCCTTCAATCAGTTTTCGGGGTCTCTTCCACTAGAGCTATTTGCCTGTTCCAAATTGTTAGTTCTTTCTCTAAATGGCAACTCTCTTAATGGAAGTATTCCAGTTAATATTGGTGATCTAGCGTCCCTTAATGTGCTCATTCTTGACCATAATAACTTCTCTGGACCAATCCCTCCAACAATTGGTAAGTTAAGCAAGCTTTATGAGCTTCGACTGTCCAGAAATAGCTTTAATGGTGATATGCCAACTGAGCTTGGAAAACTCCAAAATCTCCAAAGCATTTTAGACCTCAGTTACAACAATCTTTCTGGTCAAATCCCACCTTTGCTTGGGACTCTGTCAAAGTTGGAAGTACTTGATCTTTCTCACAATCAACTCACGGGACAAGTCCCTCCACGAGTTGGTGAAATGAGCAGCTTGGGAAAGCTTGATCTCTCTTACAATAACCTTCAAGGTGAGTTGGATGAACAGTTTTCCCACTGGCCAGCAGAGGCATTTGAAGGTAATCTACATCTTTGTGGAAGCCCTCTTAAGCTCTGCAACGGTGATGTTTTGGGCAACAAGCAATCAGGTCTTAGAGAATCATCGGTAGTAGTAATTTCAGCTTTTTCAACTTTAGCTGCAATTGCACTATTAATACTTGCAGCGAGAGTGTTCTTGAACAATAAGGAAGAATTTTTCAGAAAAGGCAGTGAAGTGAACTGTGTTTATTCCTCCTCTTCATCACAAGCACAGCGACGACCACTGTTCCAATTTAATGCTTCTGGAAAGCGAGACTTCAAGTGGGAAGATATCATGGAGGCCACAAACAATCTAAATGATGAGTTCATAATCGGTTCAGGAGGTTCTGGGACAGTCTACAAGGCTGAATTGCCAAATGGAGAAACTATGGCTGTCAAGAAAGTTTCATGGAAAGATGATTATCTCTTAAACAAAAGCTTCATAAGAGAAGTTAAGACTCTTGGGAGGATTAGGCATAGACATCTGGTGAAGCTGATCGGTCATTGCAGCAATAAAAACAAAGGAGCAGGTTGGAATTTGTTGATATATGAGTTCATGGAGAATGGGAGTGTATGGGATTGGTTACATGGGAAACCGGGAAAGATGAGCAAAGCGAAGAGGAGCCTTGATTGGGACGCAAGGTTCAAAATTGCGATGGGGCTATCTCAAGGAGTGGAGTACCTCCATCATGACTGTGTGCCAAAGATCATTCACAGGGACATCAAATCCAGCAATTTATTGCTAGATTCCAAAATGGAGGCTCACTTGGGAGATTTCGGATTGGCAAAAGCAGTCATTGAAAATTATGACTCCAATGCAGACTCTAATTCTTGGTTTGCTGGGTCTTATGGCTACATATCTCCAGAGTGTGCATATTCAGTGAAGGCGACCGAAAAAAGTGATGTATACAGCATGGGAATTGTGCTTATGGAACTTGTAAGCGGTAAGATGCCAACAGATACAGTTTTTGGAGCAGAGATGGATATGGTCAGATGGGTGGAGGTGCACATTGATATGCAAGGCGCTGCTCGCGAAGAATTGATTGATCCTGAGCTGAGACCACTTTTGCCCGTTGAAGAGTTTGCTGCATTCCAAGTGCTTGAGATAGCCTTGCAGTGCACAAAAACAACACCACAGGAGAGACCAACATCGCGTCAAGTGTGCGATCTTCTCCTTCATGTATTCAAGAACAGAGTAGTTGACTTTGAGAAGATGAAGGTGAATCATTACAAGTGA 3798 0.4368 MAIAVRIPTQEILLLFCFSSVLVLCHGKLNSESTLRVLLEAKKSFGQDPENVLSDWSEANTDYCSWRGVSCGLNSVDGSMVVDGLNLSDSSLTGSISPSLGRLQNLLHLDLSSNSLTGPIPPNLSNLSSLESLLLFSNQLTGHIPTEFSSLTSLRVLRIGDNALTGAIPVSFGNLVNLVTLGLASCSLTGSIPSELGQLSRIENLILQANELMGPIPAELANCSSLTVFTAANNRLNDSFSSELGKLKNLQLLNVANNSISGEVPSQLSNLSNLVYLNFMGNQLEGTIPPSIAQLGNLQNLDLSLNKLSGGIPEEMGNMSQLTYLVLSGNHLSGIIPRAICSNATSLEHLMLSEIGLSGEIPAELSQCQSLKQLDLSNNSLNGSIPLELYGLIGLTDLLLNNNSLVGSISPFIGNLSNLQTLALFHNNLQGALPIEIGMLGKLEILYLYDNQLSGEIPIEIGNCSSLQKIDFFGNHFGGQIPITIGRLKELNFLHLRQNELVGEIPATLGNCHKLTILDLADNQLTGGIPETFGSLRALEQLMLYNNSLEGNLPHQLINVANLTRVNLSKNRLNGSIGVLCVSRSFLSFDITNNAFDREIPPQLGNSPSLERLRLGNNNFSGEIPRSLGKIHELSLLDLSGNSLNGPVPAELSLCKKLAHIDLNNNFLSGPIPSWLGSLPLLGELKLSFNQFSGSLPLELFACSKLLVLSLNGNSLNGSIPVNIGDLASLNVLILDHNNFSGPIPPTIGKLSKLYELRLSRNSFNGDMPTELGKLQNLQSILDLSYNNLSGQIPPLLGTLSKLEVLDLSHNQLTGQVPPRVGEMSSLGKLDLSYNNLQGELDEQFSHWPAEAFEGNLHLCGSPLKLCNGDVLGNKQSGLRESSVVVISAFSTLAAIALLILAARVFLNNKEEFFRKGSEVNCVYSSSSSQAQRRPLFQFNASGKRDFKWEDIMEATNNLNDEFIIGSGGSGTVYKAELPNGETMAVKKVSWKDDYLLNKSFIREVKTLGRIRHRHLVKLIGHCSNKNKGAGWNLLIYEFMENGSVWDWLHGKPGKMSKAKRSLDWDARFKIAMGLSQGVEYLHHDCVPKIIHRDIKSSNLLLDSKMEAHLGDFGLAKAVIENYDSNADSNSWFAGSYGYISPECAYSVKATEKSDVYSMGIVLMELVSGKMPTDTVFGAEMDMVRWVEVHIDMQGAAREELIDPELRPLLPVEEFAAFQVLEIALQCTKTTPQERPTSRQVCDLLLHVFKNRVVDFEKMKVNHYK 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3386 1265 Gene3D Phosphorylase Kinase; domain 1 919 1039 - -
Glsi11g3386 1265 Gene3D Ribonuclease Inhibitor 185 285 IPR032675 -
Glsi11g3386 1265 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 31 195 - -
Glsi11g3386 1265 ProSitePatterns Protein kinases ATP-binding region signature. 965 988 IPR017441 GO:0005524
Glsi11g3386 1265 Gene3D Ribonuclease Inhibitor 385 481 IPR032675 -
Glsi11g3386 1265 Gene3D Ribonuclease Inhibitor 286 384 IPR032675 -
Glsi11g3386 1265 ProSiteProfiles Protein kinase domain profile. 959 1250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g3386 1265 Gene3D Transferase(Phosphotransferase) domain 1 1040 1262 - -
Glsi11g3386 1265 Gene3D Ribonuclease Inhibitor 582 872 IPR032675 -
Glsi11g3386 1265 SUPERFAMILY L domain-like 588 863 - -
Glsi11g3386 1265 Gene3D Ribonuclease Inhibitor 31 184 IPR032675 -
Glsi11g3386 1265 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 920 1039 - -
Glsi11g3386 1265 Pfam Leucine rich repeat N-terminal domain 36 71 IPR013210 -
Glsi11g3386 1265 Pfam Protein kinase domain 964 1242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g3386 1265 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 482 578 - -
Glsi11g3386 1265 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 196 288 - -
Glsi11g3386 1265 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 579 871 - -
Glsi11g3386 1265 Pfam Leucine Rich Repeat 105 127 IPR001611 GO:0005515
Glsi11g3386 1265 PANTHER UNNAMED PRODUCT 14 579 - -
Glsi11g3386 1265 PRINTS Leucine-rich repeat signature 800 813 - -
Glsi11g3386 1265 PRINTS Leucine-rich repeat signature 371 384 - -
Glsi11g3386 1265 SMART serkin_6 959 1250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g3386 1265 Pfam Leucine rich repeat 514 573 IPR001611 GO:0005515
Glsi11g3386 1265 SMART LRR_typ_2 103 126 IPR003591 -
Glsi11g3386 1265 SMART LRR_typ_2 295 318 IPR003591 -
Glsi11g3386 1265 SMART LRR_typ_2 247 271 IPR003591 -
Glsi11g3386 1265 SMART LRR_typ_2 319 343 IPR003591 -
Glsi11g3386 1265 SMART LRR_typ_2 127 150 IPR003591 -
Glsi11g3386 1265 SMART LRR_typ_2 824 855 IPR003591 -
Glsi11g3386 1265 SMART LRR_typ_2 175 199 IPR003591 -
Glsi11g3386 1265 SMART LRR_typ_2 440 464 IPR003591 -
Glsi11g3386 1265 SMART LRR_typ_2 151 174 IPR003591 -
Glsi11g3386 1265 SMART LRR_typ_2 488 512 IPR003591 -
Glsi11g3386 1265 SMART LRR_typ_2 536 560 IPR003591 -
Glsi11g3386 1265 SMART LRR_typ_2 800 822 IPR003591 -
Glsi11g3386 1265 SMART LRR_typ_2 679 703 IPR003591 -
Glsi11g3386 1265 SMART LRR_typ_2 727 751 IPR003591 -
Glsi11g3386 1265 SUPERFAMILY L domain-like 45 383 - -
Glsi11g3386 1265 SMART LRR_sd22_2 440 472 - -
Glsi11g3386 1265 SMART LRR_sd22_2 103 129 - -
Glsi11g3386 1265 SMART LRR_sd22_2 536 562 - -
Glsi11g3386 1265 SMART LRR_sd22_2 247 273 - -
Glsi11g3386 1265 SMART LRR_sd22_2 512 531 - -
Glsi11g3386 1265 SMART LRR_sd22_2 295 321 - -
Glsi11g3386 1265 SMART LRR_sd22_2 800 826 - -
Glsi11g3386 1265 FunFam Uncharacterized protein 388 481 - -
Glsi11g3386 1265 SUPERFAMILY Protein kinase-like (PK-like) 941 1245 IPR011009 -
Glsi11g3386 1265 Gene3D Ribonuclease Inhibitor 482 581 IPR032675 -
Glsi11g3386 1265 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1090 1102 IPR008271 GO:0004672|GO:0006468
Glsi11g3386 1265 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 289 387 - -
Glsi11g3386 1265 SUPERFAMILY L domain-like 312 646 - -
Glsi11g3386 1265 FunFam Leucine-rich repeat receptor-like protein kinase 1040 1262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3386 Glsi-ChrGlsi11 54928812 54932713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3386 777 845 Receptor kinase-like Gene Family AT1G17750 42.029 8.63e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi11g3386 Pkinase 5.8e-43 CL0016