Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3384 ATGTCTCCGCCAATATTGGCCGGTGGAATAAAAATGATTTCAGTGGCATATTCAGCTGGGACTTACTTAGGCAGAAGACTCGGGAAACCCAACACTTGCGTTAGTTGCTTACTCCCTGAAAATAATGGTCCAGCAACAAAATCATCCAATATTATTCAATTCTCCAGCCATAGTCACAAAAACTCTGCAGCTGCTCATCCCTTAGTTGTCCTAGAAATAAATGAGAACAAAACCACCCACACTCAATTCAAGAGAAGAAAAGCAATAGGCCTTGCCTTGGGTTTTGGCCTTCTTGATGTTATCCTGCAATCACAACCACAACTCACATCAGCAGCTGAAGTGGTTCCATGTGAACTAACAATAGCTCCTTCAGGCCTCGCTTTCTGCGATAAAGTTGTGGGAACTGGCCCTCAAGCTGTTAAGGGACAACTAATTAAGGCACATTATGTAGGGAAATTGGAGAATGGAAAAATATTCGACAGCAGCTACAATCGTGGCAAACCCCTTACATTTCGTGTTGGTGTTGGAGAGGTCATCAAAGGATGGGATGAAGGTATTTTGGGAGGCGATGGAATTCCTCCAATGCTTGCAGGAGGGAAACGAACATTGAAACTTCCTCCAGATCTTGGATATGGCACAAGAGGGGCTGGTTGTAGAGGAGGTTCATGTATCATTCCTCCTGATTCGGTCCTGTTGTTCGATGTGGAGTTCATTAGCAAGACATGA 726 0.4421 MSPPILAGGIKMISVAYSAGTYLGRRLGKPNTCVSCLLPENNGPATKSSNIIQFSSHSHKNSAAAHPLVVLEINENKTTHTQFKRRKAIGLALGFGLLDVILQSQPQLTSAAEVVPCELTIAPSGLAFCDKVVGTGPQAVKGQLIKAHYVGKLENGKIFDSSYNRGKPLTFRVGVGEVIKGWDEGILGGDGIPPMLAGGKRTLKLPPDLGYGTRGAGCRGGSCIIPPDSVLLFDVEFISKT 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3384 241 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC 51 239 IPR044183 GO:0009507
Glsi11g3384 241 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 137 238 IPR001179 GO:0003755
Glsi11g3384 241 Gene3D - 113 240 IPR046357 GO:0003755
Glsi11g3384 241 SUPERFAMILY FKBP-like 119 239 - -
Glsi11g3384 241 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 142 241 IPR001179 GO:0003755
Glsi11g3384 241 FunFam Peptidylprolyl isomerase 114 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3384 Glsi-ChrGlsi11 54719345 54722341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3384 142 239 Calmodulin-binding Proteins AT5G48570 41.837 9.32e-16 74.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g3384 11 54719345 54722341 Glsi11g3384 11 54719345 54722341 ECH