Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3380 ATGGATCTTTCAATAGGCGGTGCTGGTGGGTCTGGTGATGATCAGGACGCTTACAACTCTCAGATGGGAAAGAAGTCCAGCCATCGTCACGCTTCCTGTCAGATACAGAAACTTGAAGCATTTTACAAAGACTGCCCGCATCCGGATGAAAACCAACGTTGTCAATTAGGCAGGGAGCTTGGGCTTGAACCGAAACAAATAAAGTTTTGGTTTCAGAATAGGAGGACGCAAATGAAGACTCTAAATGAGCGAACAGATAACAATGTACTTCGTTCTGAGAATGAAAGGATGCAATGCGAGAACTTCGCAATCAAAGAGGCACTGAAGAATGTAACCTGCCCTTCTTGTGGGGGTCCTTCCTTTGGGGACGGAGAACGCGAACTTAGTCTGCAAAAACTGCTGCTGGAAAATGCCTATCTTAAGGAAGAGGCTACAACCAACCTCCTTTCAAGGTACGTTGGGAAACCGGTGTCACAAATTGAGTCGCTGGCTCCTCGTCCTACCGTAGGATCTCCATTATTGGATGCATCATCAGGAAGTAACCTTAGCCAAGGGATTGGAAGTCCTAATCTCAAATTAGATATTCGTACAGGTCTTTTAATGTCGGATGATAATAATATTTTGGCAAACCAACACATGGACAAGGCACTAATGTCTGAGACTGCTACTAGTGCTATGGAAGAACTAGTTAGGCTTTTGCGCATTAACGAGCCCCTATGGATCAAGTCATCAGCTGAAGGGGCATTCGTTCTTCGCCAGGAAAGCTATGAAAGGATATTTCCAAGGGCTCATCACTTCAGAAGTTCAAATACAATTGTGGAATCATCAAAAGCTTCACGAATAGTGAAAATGAGTGGAATGCAATTGGTTGACATGTTTTTAGATTCCGACAAATGGGTTAATCTTTTCCCGACAATAGTTACAAAAGCAAAAACAATGAAAGTACTTGAAAGTGGTTTGTCAGGAAGCCGAAATGGAGCCTTGCAGCTGATGTATGAAGAAATGCACATTCTTACACCTTTGATGCCATCTCGGGACTTCCTCTTCCTTCGCTCTTGTCGCCAAATCGACATAGGGAAATGGATGATAGCGGATGTGTCATTCGATTACCTTGAAGAAAACAATATTTCGTATTCTGGCTCTTGGAGGCTTCCTTCTGGATGCATGATTCATGAATTGCCTAATGGCTCTTCCGAGAGCTTCTGTGGAGTTTTAAACATGTCAGGTAGGTTGGACTTCCCTCAACTGTCTGAGGTGAATAATAGTGGGGTTAAGGTCTCCGTTCGCAGAAACATTCAACCAGGCCAGCCAGATGGCATGATTGTCAGTGCTACTGCCTCCGTTTGGCTTCCTCTCCCTTCTCAGGATGTTTTTGACTTCTTCAGAAATGAAGAAAGACGAGTTCAGTGGGATGTTCTTACCAATGGAAATCCAGTGCATGAGATTGGACACATCTTAACTGGAACTCATCCTGGAAACTGTATATCAGTTATTCGGCCTTTCATCCCTACTGAGAACAACGTTCTGATTCTTCAAGAAACTTGTGTGGAGCCCATGGGATGTTTGGTTGTATATGCTCCGGTTGATATACCGGCGATGAATGTGGTTACGAGTGGGGAAGACTCTTCCATGGTGCCGATTCTTCCATCAGGTTTTGTCGTCACAGGGGATGGCGCACGTAACACAGTTGCAGTTGGTGGAGCTTCTTGCAGCGCAAATGCTGGTAGACCAGGAGGGTCAATACTCACAGTGGCTTTCCAAATATTAGTTTGCAGCCCTTCAGCAATGAGGCACTTGAAGATGGAAGCAGTGGCTTCTGTCAACACACTCATAAACTCAACAATCCAGAAAATTAAGCAAGCTTTGAATTATTACCTGAATCCTTGTGCTACCAATGGTAATGTGTTCCTTCTAGAAAAGAAGCTAACTCTTTGGAGGGACTCTTCTATAAAAGTTTTCTTGCTGATGTTAGTGTTCAGGTGTATCCTTTGA 1992 0.4403 MDLSIGGAGGSGDDQDAYNSQMGKKSSHRHASCQIQKLEAFYKDCPHPDENQRCQLGRELGLEPKQIKFWFQNRRTQMKTLNERTDNNVLRSENERMQCENFAIKEALKNVTCPSCGGPSFGDGERELSLQKLLLENAYLKEEATTNLLSRYVGKPVSQIESLAPRPTVGSPLLDASSGSNLSQGIGSPNLKLDIRTGLLMSDDNNILANQHMDKALMSETATSAMEELVRLLRINEPLWIKSSAEGAFVLRQESYERIFPRAHHFRSSNTIVESSKASRIVKMSGMQLVDMFLDSDKWVNLFPTIVTKAKTMKVLESGLSGSRNGALQLMYEEMHILTPLMPSRDFLFLRSCRQIDIGKWMIADVSFDYLEENNISYSGSWRLPSGCMIHELPNGSSESFCGVLNMSGRLDFPQLSEVNNSGVKVSVRRNIQPGQPDGMIVSATASVWLPLPSQDVFDFFRNEERRVQWDVLTNGNPVHEIGHILTGTHPGNCISVIRPFIPTENNVLILQETCVEPMGCLVVYAPVDIPAMNVVTSGEDSSMVPILPSGFVVTGDGARNTVAVGGASCSANAGRPGGSILTVAFQILVCSPSAMRHLKMEAVASVNTLINSTIQKIKQALNYYLNPCATNGNVFLLEKKLTLWRDSSIKVFLLMLVFRCIL 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3380 663 SUPERFAMILY Bet v1-like 212 398 - -
Glsi11g3380 663 Pfam START domain 222 399 IPR002913 GO:0008289
Glsi11g3380 663 Gene3D - 219 411 IPR023393 -
Glsi11g3380 663 FunFam Homeobox-leucine zipper protein HDG1 11 97 - -
Glsi11g3380 663 SMART HOX_1 23 85 IPR001356 GO:0003677
Glsi11g3380 663 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 398 IPR042160 -
Glsi11g3380 663 ProSiteProfiles START domain profile. 211 430 IPR002913 GO:0008289
Glsi11g3380 663 Pfam Homeodomain 28 79 IPR001356 GO:0003677
Glsi11g3380 663 SUPERFAMILY Bet v1-like 419 614 - -
Glsi11g3380 663 MobiDBLite consensus disorder prediction 1 25 - -
Glsi11g3380 663 SUPERFAMILY Homeodomain-like 18 85 IPR009057 -
Glsi11g3380 663 CDD homeodomain 24 79 IPR001356 GO:0003677
Glsi11g3380 663 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Glsi11g3380 663 SMART START_1 220 467 IPR002913 GO:0008289
Glsi11g3380 663 CDD START_ArGLABRA2_like 215 398 - -
Glsi11g3380 663 Gene3D - 11 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3380 Glsi-ChrGlsi11 54620443 54626054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3380 400 623 Homeobox Transcription Factor Family AT1G73360 43.363 1.62e-49 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi11g3380 START 8.6e-24 CL0209