Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3368 ATGGAAGTAACAATGACAAGGAAAGCTCTACTCTGGCCACTTCTTTTGGTGTTGGCTAGTTTCATTGTAATCCCTGTTTGTGGGAAGAACTTGCCTCCTTGGATCATTTCCGATGGCCGTTATCATGAAGCATTACGTAGAATGCAGGCTATGAAGACCTCCATTGCTTCAGCACCATCACCTTCCTTCTCACCCTCCCCTGCACCTTCTCCTCTGCCACCACCGGTTTCGAATAATCCCCGCGTATTGCTTGCGACATCTTACGGTGCTGATCCAACAGGCAAATTAGACAGCACTGAAGCTCTTCTTGCAGCCATGGTTGATGCAGTCAAAGGTCCAACTGAAGGGTTATTGATGCAGGGCATCACTAATCTTGGAGGTGTACAGATTAATCTTCAGGGTGGCAATTACTTGATCAGCCGACCGCTACATTTGCCGGTTGCCGGAGTCGGAAACCTTATGATCCATGGGGGAACTATAAGAGCCTCCGATAATTTTCCAAATGACGGGTATCTCATTGATTTATCAACCTCTTCCAGTGAGAACGATGGAAAAGACAGCTACAATTACGAGTACATAACTTTCAAGGACCTTTTGTTGGACTCTAACTACCAAGGAGGAGGCATTTCGGTCATAAACTCTCTTAGAATAGGCATAGACAACTGCTACATCACTCATTTCACCACCAATGGAATTTCAGTACAAAGTGGCCATGAAACCTTCATCAGAAACTCCTTCATTGGTCAGCACATCACTGCAGGTGGTGATAAAGGGGAAAAGAACTTCACAGGCACTGGAATAATCCTCCAGGGTAATGATAATGCTGTCACAGACGTTGTGATTTTCTCTGCTGCTATAGGAATAATGCTTACTGGTCAGGCCAATATAATTTCGGGTGTACACTGCTACAATAAAGCCACTGGCTTTGGAGGTACTGGGATTTATTTGAAACTTCCTGGTTTAACACAAACTAGGATTGTTAACTCTTACATGGATTACACCAATATTGTTGCTGAAGACCCAGTTCAACTCCATATTTCTAGTAGCTTTTTCCTTGGTGATGCCAATATTGTCCTAAAATCAGTGAATGGGGTCGTAAGTGGTGTCAATATTGTTGACAACATGTTCTCTGGCTCCAACAATGGGGTTGGAATTGTTCAGCTAGACCAATCAAATGGTAATTTCAAGCAAGTTGATCAAGTCGTGGTTGATAGGAACGTTGTGAAAGGGATGGACATCAAGAGCACGGTTGCAAAGTTGTCTATGCAAGGGAATGGAACCTCATGGACAGTTGATTTTAACAGCATTCTGGTTTTTCCTAACCTTATTAAACATGTTCAATACTCGTTAAGTGCCACAGGAAACACCTTCCCTAATCATGCTCTGAGGAACGTGTCTCAGAATTGCGTCGTGATTGAGACGAGTGAGGCAGTACCTGCAAGTTTATATGTTGCAGTGGATCAAAGTAATTGA 1473 0.4345 MEVTMTRKALLWPLLLVLASFIVIPVCGKNLPPWIISDGRYHEALRRMQAMKTSIASAPSPSFSPSPAPSPLPPPVSNNPRVLLATSYGADPTGKLDSTEALLAAMVDAVKGPTEGLLMQGITNLGGVQINLQGGNYLISRPLHLPVAGVGNLMIHGGTIRASDNFPNDGYLIDLSTSSSENDGKDSYNYEYITFKDLLLDSNYQGGGISVINSLRIGIDNCYITHFTTNGISVQSGHETFIRNSFIGQHITAGGDKGEKNFTGTGIILQGNDNAVTDVVIFSAAIGIMLTGQANIISGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTNIVAEDPVQLHISSSFFLGDANIVLKSVNGVVSGVNIVDNMFSGSNNGVGIVQLDQSNGNFKQVDQVVVDRNVVKGMDIKSTVAKLSMQGNGTSWTVDFNSILVFPNLIKHVQYSLSATGNTFPNHALRNVSQNCVVIETSEAVPASLYVAVDQSN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3368 490 SMART pbh1 214 236 IPR006626 -
Glsi11g3368 490 SMART pbh1 366 387 IPR006626 -
Glsi11g3368 490 SMART pbh1 271 292 IPR006626 -
Glsi11g3368 490 SMART pbh1 150 175 IPR006626 -
Glsi11g3368 490 FunFam Polygalacturonase QRT3 85 483 - -
Glsi11g3368 490 SUPERFAMILY Pectin lyase-like 81 417 IPR011050 -
Glsi11g3368 490 Gene3D - 85 483 IPR012334 -
Glsi11g3368 490 PANTHER POLYGALACTURONASE QRT3 20 490 IPR039279 GO:0004650
Glsi11g3368 490 MobiDBLite consensus disorder prediction 62 76 - -
Glsi11g3368 490 MobiDBLite consensus disorder prediction 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3368 Glsi-ChrGlsi11 54307886 54309847 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g3368 11 54307886 54309847 Glsi11g3368 11 54307886 54309847 ECH