Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3362 ATGTTGGCTACAGCGGCTTTTTCCCCTGGCTACGCCTTCCCTTTGGCCACCGGTAGAGCAGTCCAATTCAATTCAACCAATCCTTCTCCTCTAAAGCTCATAGCATCTCTACAAGACCACCCGCTTGCAAGCAAAATTGTGGTTAAAAATTTACCATATTCTGCTGGTGAGGCTAGTCTTCAGAAGAAATTTTCAAATTTTGGCGAGATAGCTGAAGTTAAAGTGGTTAAAGATACCACAAAAAGATCTAAGGGATATGCTTTTATTCAATACACTAGTCAAGGTGATGCCATGCTTGCATTAGAAACCATGGATCAAAAGGTATTTGATGGCCGGATGATTTATGTAGAACTTGCAAAACCTGGGAGAGATGATTTTGGTGGACGCCCAAAGACCTCAGGGCCCCCAAAGAAGTGGCATTTGCCAGTACAAGAGGAGGTGGTGGATTGCTGGTACTGA 459 0.4379 MLATAAFSPGYAFPLATGRAVQFNSTNPSPLKLIASLQDHPLASKIVVKNLPYSAGEASLQKKFSNFGEIAEVKVVKDTTKRSKGYAFIQYTSQGDAMLALETMDQKVFDGRMIYVELAKPGRDDFGGRPKTSGPPKKWHLPVQEEVVDCWY 152
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3362 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 121 IPR000504 GO:0003723
Glsi11g3362 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 114 IPR000504 GO:0003723
Glsi11g3362 152 CDD RRM_SF 46 117 - -
Glsi11g3362 152 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 41 131 - -
Glsi11g3362 152 SMART rrm1_1 45 117 IPR000504 GO:0003723
Glsi11g3362 152 SUPERFAMILY RNA-binding domain, RBD 44 131 IPR035979 GO:0003676
Glsi11g3362 152 Gene3D - 35 139 IPR012677 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi11g3362 Glsi-ChrGlsi11 53926655 53930270 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3362 43 124 Eukaryotic Initiation Factors Gene Family AT4G34110 30.488 1.75e-07 47.8
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g3362 11 53926655 53930270 Glsi11g3362 11 53926655 53930270 ECH