Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3354 ATGATATCGAGATTTGGGGAATACTTTTTGAAGTTTTTGTCTGCGAAAGACGTCCGAGCAGCTTCAACTGATACAATTGGATCAAAATCATTGTTTGACTTGAAATTTAGTCTGTATAATTCTAATGGGTTGTTGGTTAAAGTGGTCAAAGATACCACAAAAAGATCTAAGGGGTATGCTTTTATTCAATACACTAATCAAGATGATGCCATGCTTGCATTAGAAACTATGGATCAAAAGGTATTTGATGGCCGGATGATTTATTTAGAACTTGCAAAACCTGGGAGAGATGATTTTGGTGGACGCCCAAAGACCTCAGGGCCCCCAAAGAAGTGGCATTTGCCAGTGCAAGAGGAAGTGGTGGATTGCTGATACGCATATGTTGCTAAAGTAGAAGACATAAAGAAACCTACAACATATGAAGAAGCATCACTCAGGGAGGAACAAAACAAGGGAATGGATCAGTCAAAAGAAATAAAGCTTGAGTAG 489 0.3885 MISRFGEYFLKFLSAKDVRAASTDTIGSKSLFDLKFSLYNSNGLLVKVVKDTTKRSKGYAFIQYTNQDDAMLALETMDQKVFDGRMIYLELAKPGRDDFGGRPKTSGPPKKWHLPVQEEVVDCXYAYVAKVEDIKKPTTYEEASLREEQNKGMDQSKEIKLE 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3354 162 Gene3D - 6 113 IPR012677 -
Glsi11g3354 162 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 87 IPR000504 GO:0003723
Glsi11g3354 162 SUPERFAMILY RNA-binding domain, RBD 46 104 IPR035979 GO:0003676
Glsi11g3354 162 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 46 115 - -
Glsi11g3354 162 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 94 IPR000504 GO:0003723
Glsi11g3354 162 MobiDBLite consensus disorder prediction 139 162 - -
Glsi11g3354 162 CDD RRM_SF 46 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3354 Glsi-ChrGlsi11 53516605 53520904 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3354 24 89 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 6.19e-06 43.5