Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3348 ATGTATCCCATCCTCATTTGCTGTGTGCTATGGATTCTTAGAACGAGAAGTTATGATGGGATTTTGAAGGTTTGGGGAAAGATCACAAACAACGGTGTCTTTCAGGGTAAGAGTTCTGGTATTGGAGTGCCAAGATTTTTGCTTCGCATCTTACCAGCAGAACTTTCTTGGTGGTGGCCACCTATTTGGGGACCCCTCAAACTGGCACTTGGTTACTTTTTGTCTGCTTCAGCCAGACCTGTGTTCTATGATTTAGTTCTTTTGTTTGAGTTGGTTCTATTGGAGAGTGCTTTTCCACTGGGATGGTTCATGCTCTTCTCAGCAGCCTTTACGCATGTAGATGATCCTTTCTCTTTCTCCAGGAAGAGGCTGAAAGTATCAGATCTTGGACATCAAGATCTAGATTCACAAGCATATGCAGGAAATTGCAGGGCAGAAGCCAGAGAACAAAAGAAGCAGAAACAACAGATTAATTACCTGGTACACGTGCTTCCCCTTCCCCATAGCATCGCCTATGAAGAATTTTCGTATTCCCTGGAAGGTGATCCTCATGTGGTAGAGCTAGCAGCTTATTTTATGTTTGCCAAAACTGAACTTTTACGACAGTATGGAAGAAAGGTTGGTGATGGTGAGTTTCATGAGAAGTGGGGACTGTTGATTCTGGGTTTTGTGTTGGGGGAAGCCAGAATGCTGGCTTCTGTTGAAGGAAAAAAGGATGCCCACCTAGAGATTACTACAACTCTTAAGTTCTTAAACATTGATTTCTATTGGGCTATTGATTGTTGGATTAGATTTTGGGAATTTAGTTGGATAGGGGTCCCACTAGGAAACCCCAACAGTGCCATGACTGTGGCAGCCATCATCTATGGGGGGACCATTGAAAATGGTAGGCAGATTATATTTTCTCACATCTGTACCATTTTTTTTCCTTATCCCAGCCAGAATACTGGTGATATTCCCTCTTGTTCCAATCTTGATGATAGAGTTTATTCAGATTCTGGATTGGATATGAGCTGCCAGTCAAATATTAATAGCAGTGATACTCCTGTATGTTGTACCACTGGGAATATTTCATTTCAGGACCAGAGTCATCCTGGCTATGTGCAGCGTGCTTTTGTGACTGGATGGATGTATGTCAATGAACATGGGCAAATGTGTGGTCCCTATATTCAAGAGCAGTTATACGAAGGCTTAACTACTGGTTTCTTGCCAGTTGAGCTTCCTGTGTATCCAGTGATTAATGGCACATTAATGAACGCTGTACCATTGAATTACTTCAAACAGTTTCCTGACCATGTTTCCACGGGGTTTGCATATCTTGGCATGGGTATCTCAGGCACAATCATGCCAACAAATTGTGCCACCTCTTCTGATAAGGATATGTCAGCATATAGACAAAATGGATCCTTTGAGCGTGCTTCTCCTGTTGCTGTTAGCCTTGGTTCACAGTCAGTTTCCCAGTCACATGTGAACTACTGCAGTTATAGATCAAATCACCTAACATCGAACTCCAAGGAAAGTTGCATGATGTCATCTCAGATGTTACATGAAGAATGCTGTTGGCTTTATGAGGATGAAAATGGAATGAAACATGGGCCGCATTCCATTACAGAATTAATTTCCTGGCATCACTGTGGACATCTCCAAGATTCGTCAGTGATCCATCATACTGAAAACAAGTATAGCCCCTTTGTGCTTTCGTTAGCTATTAATGCATGGAAAAGAGGTAAGTGTGAAACCATCTGTAGATCAGGTTCTGAAAGCAATAGGGCTGGTGGTGATACGGTGAACTTCATCTATGAAATATCTGAAGATATTTCTTCTCAACTGCACTTGGGAGTCATGAAAGCTGCCCGCAGAGTTGTGTTGGATGAGATTATTGGCAACACCATTGCAGAATTTATTACTGAAAAGAAATTTGAGAGACATAAGCTTGAATCAATTGATCAGCTTTCTGAGACTCATGTGTCGCACAGAAAAATGACTGAGGTTGCTGTGGAGATGAGAAAAGGAACTGTTCTTTCAAGTGAGCAAGCATCTTCCCAAACTTTAGATGATCGTTCTTGTAATGAAATTTCCGGAGTGTCTCCAACAAGCACTAAATCAGTTGGAAGCATTGAAAATTTCTGGTGGTCGTTTGCTGTTGTTCGTAAAATACTTTTCGATTATTGCATGCAAGTCATGTGGAATGCAGTTGTTTATGACATTATGGCAGAGTACCTACATTCCTGGAGAAAGAGAAAACTTTGGTCTATTCGTCCTAAGCATCAATCATTTAGTAATGGATGTAGAGATTATGTTGGAAAGATCAAATCAGAAGAAGCTTTGCTTCTCAGGCCAGGTTCCTCTGAACATGACGCTGATGGCTGTTCTCATTTGGATGTGATGGCATTTGAAAGAGATTATCCTAGTCAGTTATCCTCTATCTCTTCTAGGTGTCTCAAATCTGGAAACTTTCTAGAAGGTCATAGAGTCTCATGCACTGATCGTAACCAAAAAGATTTGACTTGCATTCTTGAAAGCGTGGAGAATGAGCTTCACTTGTCTTCAAAGGTGTCTTTAGCTGAATATGTTAAAAGTTTCATTGACAAGGAAGCGAACAAATTATTTACTGTTCCTGAAGACAACTTGGGCCAGGATGCCATCAGTCTTGGTGACAAAACATCTGCAAAGGAAATTCTATTTGACGCATTTGTGGCTCCTATGAAAGAAGATTTGTTTCAAGATTCTTCATCTAGAAACCATATGTCTAATTTATTTTCAAGTGCATTTCAGGAATTGCATGCATATGTTGATGATGTGGTTAATGAAGAGGATATTGGCGACCTACCACCTCCAGGATGTGAAGAGAACTTTAGAACTATTGTCTCACACTACAATTATAAATATCGACCTTCAAGGTCAGTCGAAAGTGTCCCTAAGATTACAGAATATGTTGCCACAGCTCTGTGCCGACAGAAGTTGCATGATGAAGTTCTTGAAGAGTGGAAATCTTTGTTTCTTGATGCTGCATTTAATCAACTTTTTATATCATTATGCACTACGAAGAGAAAATGCCAATCTGACGGTCGCGTGGAAGGGAAAGCATTGAATTCATGTAGGGAACATTTGGACATTCTGGCTTCTGGACTGGGAAAAATGAAGAAAACACCAAAAAATCCTTCATCTGGAGCTTCTCTGGTGAGTGGGAAATATACATATTACCGCAAGAAGCTGCCACAGAAAAAGTTAGGTTCTTCTCAACATATAGCGGCAGATGATTCTGGGCTCGGCAAGAAACCATTGGATAAGTTAAAGAGACATGTTTCTATGGAAGTGGATGAGTCTGCAGAAGTTGAAATAGCTGCTGTTAAGCCTGGAAAAGCTAAGCTGATTAGAGGGAAGAAGGATACATCCCCTAATGGCAACCCTTTTCCCGTCAGTGCCAAAAGCAACTCGCTCAGTAACCAGTCATCCTTGAAAGTTGCAGTTAGTCAAAAAGTATTGAAAGCTTCACGGACTGTTCAAGATGACTTTAAGGATGTTGTAAAACGTAACGGGGAGAGGCTTTCAGCCATCACAGAAAATAGTGTTGGCATGAAGAAGGTAGTTAATAGCAATGGTCGTGATGGTGCCATTCATGGAAATTCCACTCGACATTGCTCCAGAGATACACTTAATGCAACCATTAAAGTATCAAAACCAAAAAGGAAGCATCTGATGGATAGAGTGTCATCCCCGCATCCTGCAAAGGCTTTGAGAATTGCATATGATGGTTCAAAGGCTGGAGTTGGGGGACAGGTTACCATGGCAAAGCGGAATTCTGCTAAATCCAAGCCATCAAATTTATGTCCTAGGTCTGATGGATGTGCCAGGACTTCTATTGATGGGTGGGAATGGCATAAATGGTCTGTAAATGCCAGTCCTGCAGATAGAGCACGTGTCAGGGGGACTTTTTGTGTTCAAAAGAAGTGTATAAATTCTGATAGTAATTCATCTCATTGGTCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAATTGCGTAGCCTTCTTGCTGCTGCAGAGGGTGCTGATCTTCTGAAGGCCACTCAATTGAAGGCAAGGAAAAAGCGTTTACGTTTTCAAAGGAGCAAGATACATGACTGGGGTATTGTTGCCTTGGAGCCAATAGAGGCAGAGGACTTTGTGATTGAATATATCGGAGAACTAATTCGTCCTCGGATATCTGATATACGTGAACGTCAGTATGAGAAGATGGGAATTGGAAGCAGTTATCTATTTAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATAAACCACTCTTGTGAGCCTAATTGCTACACAAAAGTTATATCTGTTGAGGGTCAAAAGAAGATTTTCATATATGCTAAACGTCATATAGCTGCTGGTGAAGAGATTACATACAATTATAAGTTTCCTTTGGAGGAGAAAAAGATTCCTTGCAACTGTGGCTCCAGAAAGTGTCGTGGATCACTGAATTAG 4518 0.4112 MYPILICCVLWILRTRSYDGILKVWGKITNNGVFQGKSSGIGVPRFLLRILPAELSWWWPPIWGPLKLALGYFLSASARPVFYDLVLLFELVLLESAFPLGWFMLFSAAFTHVDDPFSFSRKRLKVSDLGHQDLDSQAYAGNCRAEAREQKKQKQQINYLVHVLPLPHSIAYEEFSYSLEGDPHVVELAAYFMFAKTELLRQYGRKVGDGEFHEKWGLLILGFVLGEARMLASVEGKKDAHLEITTTLKFLNIDFYWAIDCWIRFWEFSWIGVPLGNPNSAMTVAAIIYGGTIENGRQIIFSHICTIFFPYPSQNTGDIPSCSNLDDRVYSDSGLDMSCQSNINSSDTPVCCTTGNISFQDQSHPGYVQRAFVTGWMYVNEHGQMCGPYIQEQLYEGLTTGFLPVELPVYPVINGTLMNAVPLNYFKQFPDHVSTGFAYLGMGISGTIMPTNCATSSDKDMSAYRQNGSFERASPVAVSLGSQSVSQSHVNYCSYRSNHLTSNSKESCMMSSQMLHEECCWLYEDENGMKHGPHSITELISWHHCGHLQDSSVIHHTENKYSPFVLSLAINAWKRGKCETICRSGSESNRAGGDTVNFIYEISEDISSQLHLGVMKAARRVVLDEIIGNTIAEFITEKKFERHKLESIDQLSETHVSHRKMTEVAVEMRKGTVLSSEQASSQTLDDRSCNEISGVSPTSTKSVGSIENFWWSFAVVRKILFDYCMQVMWNAVVYDIMAEYLHSWRKRKLWSIRPKHQSFSNGCRDYVGKIKSEEALLLRPGSSEHDADGCSHLDVMAFERDYPSQLSSISSRCLKSGNFLEGHRVSCTDRNQKDLTCILESVENELHLSSKVSLAEYVKSFIDKEANKLFTVPEDNLGQDAISLGDKTSAKEILFDAFVAPMKEDLFQDSSSRNHMSNLFSSAFQELHAYVDDVVNEEDIGDLPPPGCEENFRTIVSHYNYKYRPSRSVESVPKITEYVATALCRQKLHDEVLEEWKSLFLDAAFNQLFISLCTTKRKCQSDGRVEGKALNSCREHLDILASGLGKMKKTPKNPSSGASLVSGKYTYYRKKLPQKKLGSSQHIAADDSGLGKKPLDKLKRHVSMEVDESAEVEIAAVKPGKAKLIRGKKDTSPNGNPFPVSAKSNSLSNQSSLKVAVSQKVLKASRTVQDDFKDVVKRNGERLSAITENSVGMKKVVNSNGRDGAIHGNSTRHCSRDTLNATIKVSKPKRKHLMDRVSSPHPAKALRIAYDGSKAGVGGQVTMAKRNSAKSKPSNLCPRSDGCARTSIDGWEWHKWSVNASPADRARVRGTFCVQKKCINSDSNSSHWSNGKGLSARTNRVKLRSLLAAAEGADLLKATQLKARKKRLRFQRSKIHDWGIVALEPIEAEDFVIEYIGELIRPRISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCNCGSRKCRGSLN 1505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3348 1505 Gene3D SET domain 1295 1505 IPR046341 -
Glsi11g3348 1505 SMART set_7 1366 1489 IPR001214 GO:0005515
Glsi11g3348 1505 Gene3D - 502 589 IPR035445 -
Glsi11g3348 1505 MobiDBLite consensus disorder prediction 1125 1145 - -
Glsi11g3348 1505 SUPERFAMILY SET domain 1361 1502 IPR046341 -
Glsi11g3348 1505 Pfam SET domain 1378 1482 IPR001214 GO:0005515
Glsi11g3348 1505 MobiDBLite consensus disorder prediction 673 701 - -
Glsi11g3348 1505 SMART PostSET_3 1489 1505 IPR003616 -
Glsi11g3348 1505 ProSiteProfiles SET domain profile. 1366 1483 IPR001214 GO:0005515
Glsi11g3348 1505 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 314 1505 IPR044570 GO:0042800|GO:0051568
Glsi11g3348 1505 ProSiteProfiles Post-SET domain profile. 1489 1505 IPR003616 -
Glsi11g3348 1505 ProSiteProfiles GYF domain profile. 518 569 IPR003169 GO:0005515
Glsi11g3348 1505 SUPERFAMILY GYF domain 514 565 IPR035445 -
Glsi11g3348 1505 CDD SET_SETD1 1354 1501 IPR037841 GO:0042800|GO:0048188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3348 Glsi-ChrGlsi11 53128942 53146642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3348 1365 1505 C2H2 Transcription Factor Family AT2G23740 36.810 1.47e-18 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi11g3348 SET 1.6e-21 No_clan