Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3306 ATGACTTCTGCTCAGGACCTCACTGATAATGAATATAATGAGCAGCATCAGTCAGACTTACAGAGTCAATCACCATCTGCAAACAGAATTTCACATCCAGTTATTTCTACCCAGAATGTTCCTTATGCAAAGCCTCAACAGCTTGGAACCAGGCATCATGCTACGGTACCAGCTGTTTATCCGTATCCAGATCCCTACTATAGAAGCATCTTTGCTCCCTACAACACACAACCTTATCCCCCTCAACTCTATGGTGGACAGCCAATGGTCCATCTTCAGCTAATGGGAATTCAACAAGCTGGTGTTCCTCTGCAAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTGAGACGAAGACAGTCTCGTGCCAAAGCTGAATCAGAAAATAAAGTTATCAGGAATAGGAAGCCATATTTGCACGAATCTCGACATTTACATGCAGTTAGAAGAGCTAGGGGATGTGGAGGTCGGTTTCTGAATTCAAAGAAAAATGAGAGCCAAAAGAATGAGGTGGCATCAGCTGACAAATCACAATCCAATAACAATCTCAACTCTGATAAGAATGATCTCGCTCCATCAAATAGGATGTCATAA 618 0.4223 MTSAQDLTDNEYNEQHQSDLQSQSPSANRISHPVISTQNVPYAKPQQLGTRHHATVPAVYPYPDPYYRSIFAPYNTQPYPPQLYGGQPMVHLQLMGIQQAGVPLQTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVIRNRKPYLHESRHLHAVRRARGCGGRFLNSKKNESQKNEVASADKSQSNNNLNSDKNDLAPSNRMS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3306 205 MobiDBLite consensus disorder prediction 168 205 - -
Glsi11g3306 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 111 166 IPR001289 GO:0003700|GO:0006355
Glsi11g3306 205 ProSitePatterns NF-YA/HAP2 subunit signature. 114 134 IPR018362 GO:0003677|GO:0016602
Glsi11g3306 205 PRINTS CCAAT-binding transcription factor subunit B signature 143 166 IPR001289 GO:0003700|GO:0006355
Glsi11g3306 205 PRINTS CCAAT-binding transcription factor subunit B signature 112 134 IPR001289 GO:0003700|GO:0006355
Glsi11g3306 205 MobiDBLite consensus disorder prediction 162 205 - -
Glsi11g3306 205 MobiDBLite consensus disorder prediction 1 28 - -
Glsi11g3306 205 SMART cbf3 108 169 IPR001289 GO:0003700|GO:0006355
Glsi11g3306 205 ProSiteProfiles NF-YA/HAP2 family profile. 109 169 IPR001289 GO:0003700|GO:0006355
Glsi11g3306 205 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 10 196 IPR001289 GO:0003700|GO:0006355
Glsi11g3306 205 Gene3D - 109 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3306 Glsi-ChrGlsi11 50244113 50249910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3306 2 205 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.769 3.39e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Glsi11g3306 CBFB_NFYA 4e-26 No_clan