Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3303 ATGCTTCAAAGAAAGAGGAGGTTTACACCAGTAATTCTGAAGGCTGCGACTACTAGATTTTCTCATAAAAATCTGGTCGATAAGAGTGATGTAGTTCACATCTATAAAGGGATCTTAAGAGATGGTACTAAAGTGAGAATTAAGATCTACTGGGATAATATATCAAGGAAAGAGTGCAGCAAGTTTGTTGAAGAATGTAAAGTTCTCATTGAATTACACCATAAGAACCTTGTTAGGGTTCTAGGATGGTGCAAGAGCAAAAGGGCTATTGTTATAGAATGGACAGAAGGAGAAAACGTGGAAATGTGGCTATTAGGATCTGCTCCCTTATGGAATCACAGGTTGAAAGTGTTAATGATAGTTGCAGAATGTATGTGTTTTCTTCAAGAGGAATGGCTTGAAGTGGACTATGATCTTAGGACAAGCATTGTTTTATTGTCTGATAATTTGGACCCATTAATTTCAAGGTTCAGAGTTGGAGATTAG 486 0.3704 MLQRKRRFTPVILKAATTRFSHKNLVDKSDVVHIYKGILRDGTKVRIKIYWDNISRKECSKFVEECKVLIELHHKNLVRVLGWCKSKRAIVIEWTEGENVEMWLLGSAPLWNHRLKVLMIVAECMCFLQEEWLEVDYDLRTSIVLLSDNLDPLISRFRVGD 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3303 161 Gene3D Phosphorylase Kinase; domain 1 1 94 - -
Glsi11g3303 161 SUPERFAMILY Protein kinase-like (PK-like) 5 155 IPR011009 -
Glsi11g3303 161 ProSiteProfiles Protein kinase domain profile. 20 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g3303 161 Pfam Protein tyrosine and serine/threonine kinase 33 150 IPR001245 GO:0004672|GO:0006468
Glsi11g3303 161 PANTHER OS01G0253100 PROTEIN 6 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3303 Glsi-ChrGlsi11 48064542 48065027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3303 6 157 Receptor kinase-like Gene Family AT5G56890 29.814 1.36e-16 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Glsi11g3303 PK_Tyr_Ser-Thr 6.2e-12 CL0016