LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g3295	ATGAATGAACTTAGCTTTGAACTCAGAGCTGGTTTCATGGAACAGTACGAGAAAGTTGAGAAGATAGGTGAAGGCACCTATGGTGTGGTTTACAAGGCTCGTGATCGGGTCACAAACGAGACCATAGCATTGAAGAAAATTCGACTGGAGCAGGAAGATGAGGGGGTGCCAAGCACCGCGATACGTGAGATTTCCCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAGGTTGCAGGATGTAGTGCACAGTGAGAAGCGTTTGTATTTGGTTTTTGAGTACCTGGACTTAGATCTGAAGAAGCACATGGACACATCTCCCGATTTCGCAAAAGATCCACGACAAGTAAAAATGTTTCTTTACCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAGTTCTTCATCGAGACTTGAAACCACAGAATTTGTTGATAGATTGCCGGACTAATTCACTAAAGCTTGCTGATTTTGGATTGGCCAGGGCATTTGGTATTCCTGTCAGGACATTTACTCATGAGGTGGTAACACTATGGTACAGAGCTCCAGAAATATTGCTTGGATCTCATCATTATTCTACCCCCGTCGATGTTTGGTCAGTGGGATGTATATTTGCAGAGATGGTAAACCAACGACCACTATTTCCGGGAGACTCTGAGATTGATGAACTGTTTAAAATATTCAGAATCATGGGTACACCAAATGAAGATACATGGCCTGGAGTGACTTCATTGCCTGATTTTAAATCAGCCTTTCCCAAGTGGCCTTCTAAGGGTCTAGCAACTGTGGTTCCAAATCTTGAGCCAGTGGGCATTGATCTTCTTTCTAGTATGCTTTGCTTGGATCCCAGTAGAAGAATTACTGCCAGGAACGCTCTCGAGCACGAGTATTTCAAAGACATTAAATTTGTACCTTGA	921	0.4289	MNELSFELRAGFMEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDTSPDFAKDPRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDCRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSHHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRIMGTPNEDTWPGVTSLPDFKSAFPKWPSKGLATVVPNLEPVGIDLLSSMLCLDPSRRITARNALEHEYFKDIKFVP	306

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g3295	306	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	135	147	IPR008271	GO:0004672\|GO:0006468
	Glsi11g3295	306	PANTHER	CELL DIVISION PROTEIN KINASE	14	299	-	-
	Glsi11g3295	306	SUPERFAMILY	Protein kinase-like (PK-like)	11	302	IPR011009	-
	Glsi11g3295	306	Gene3D	Phosphorylase Kinase; domain 1	13	96	-	-
	Glsi11g3295	306	CDD	STKc_CDK1_CdkB_like	16	299	-	-
	Glsi11g3295	306	Gene3D	Transferase(Phosphotransferase) domain 1	98	304	-	-
	Glsi11g3295	306	FunFam	Cell division control protein 2 homolog	98	304	-	-
	Glsi11g3295	306	SMART	serkin_6	16	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g3295	306	FunFam	Cell division control protein 2	13	96	-	-
	Glsi11g3295	306	ProSiteProfiles	Protein kinase domain profile.	16	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g3295	306	Pfam	Protein kinase domain	16	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g3295	306	ProSitePatterns	Protein kinases ATP-binding region signature.	22	45	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g3295	Glsi-ChrGlsi11	46083720	46108746	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g3295	13	306	Core Cell Cycle Gene Families	AT3G48750	85.374	0.0	529

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-Pl	Glsi11g3295		Pkinase	4.9e-80	CL0016