Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3275 ATGTACTGGATGGAAATGTCTCAACTTTACTGTGGAGGCTGTAGGACATTGCTAATGTACACATGTGGAGCTACAAGTGTGAGATGCTCCTGCTGTCACACTGTGAACCTTGTGCCAGCATCTAACCACTTTGCCCATATACACTGTGGGAACTGCCGGACAATACTCTTGTATCCATATGGAGCTCCATCAGTCAAATGTGCAGTTTGTCACTATATAACTGACGTCATTATGACCAATGGAAGGCTTCCAAATCCTGTCCACAGACCAAATGGAACAACCAACTCTGGAATTGTACCCTCTACTTCAACGTCGATGCCCCAATCTCAGAGTCAAACTGTCGTGGTAGAAAATCCTATGTCCATCGATGCAAGTGGGAAATTGGTGAGCAATGTAGTTGTTGGCATTACCACAGAGAAGAAATAA 426 0.4437 MYWMEMSQLYCGGCRTLLMYTCGATSVRCSCCHTVNLVPASNHFAHIHCGNCRTILLYPYGAPSVKCAVCHYITDVIMTNGRLPNPVHRPNGTTNSGIVPSTSTSMPQSQSQTVVVENPMSIDASGKLVSNVVVGITTEKK 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3275 141 MobiDBLite consensus disorder prediction 86 110 - -
Glsi11g3275 141 Pfam LSD1 zinc finger 11 35 IPR005735 -
Glsi11g3275 141 Pfam LSD1 zinc finger 49 73 IPR005735 -
Glsi11g3275 141 NCBIfam zinc finger domain, LSD1 subclass 46 74 IPR005735 -
Glsi11g3275 141 NCBIfam zinc finger domain, LSD1 subclass 8 38 IPR005735 -
Glsi11g3275 141 MobiDBLite consensus disorder prediction 84 110 - -
Glsi11g3275 141 PANTHER PROTEIN LSD1 4 140 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3275 Glsi-ChrGlsi11 43375221 43376864 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Glsi11g3275 zf-LSD1 1.7e-11 No_clan