Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3254 ATGGGGCAATCCCTTTTCCAAAGAGTAGGCTTTGCATACAATAATAAAGGCAGAGGTGTGTGGCGTTCTGGAATGTTTGGTAGAGTGGTCGCAGCATACTCTGCTTCACAAAGAATTCTCCAGTGTTGCATCTCCTTTGGCTTTGATACCCAAAGGCTCTTAGACCACGAAAGTTATGAGAACAGAGCTGTGTATCTTCTCATTCCTATTGATGGAGTACAAGTGGGAGATCCTAATCCGGAGAGGAGGCAAAAATCCTGTGGATTTGGACCAATAGCCTTCATAGCTTCTGTACAATCTCTGGAAAAGATACCACAATCTCTGAGCTCTTCAGGGAGGTTTGACTTTCACATACAGCTGCCTACTCCTGCAGCTTCGGAGCGTGGGGCTATGTTGAAGCATGAAGTACAAAAGCGCCACTTGCAATGTGCTGATGACATCCTGCTAAATGTGGCTGTCAAATGTGATGGCTATGACGGTTATGATCTGGAAATATTGGTTGACAGAGCTGTCCATGCTGCCGTTTGCCGGTTTTTGCCATCCAATGCTGCTCTTAATGAGCATGACTGTCCTGCTTTACTTATGGAGGATTTCTCTCAGGCAATGCATGATTTTCTTCCAGTTGCAATGCGTGACATTACGAAATCTGCTTCTGATGGTGGACGTTCTGGATGGGATGATGTGGGTGGTCTTGTTGACATTCGAAATGCTATTAAAGAGATGATAGAGTTGCCTTCAAAGTTTCCAAAAATTTTTGCTCAAGCTCCTTTGAGGTTGCGGTCAAATGTCCTTTTATATGGGCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCTGCTGCTTGTTCACTACGATTTATATCAGTGAAAGGACCAGAGCTGTTGAACAAATACATTGGTGCTTCCGAACAAGCTGTTAGAGATATATTCTCTAAAGCAGCTGCTGCTGCACCATGTCTACTCTTTTTTGATGAATTTGATTCTATTGCTCCCAAGAGAGGACATGACAATACTGGAGTAACTGATCGTGTTGTAAATCAATTTTTGACTGAGTTAGACGGTGTCGAGATTTTAACAGGTGTATTTGTGTTTGCTGCAACCAGTAGACCGGATTTGCTTGATGCAGCACTCTTGAGACCAGGAAGGTTAGATCGGCTTTTATTCTTTGACTTTCCTTCTTGGCGTGAGCGGTTGGAAATTCTTACAGTACTTTCTAGAAAGTTACCAATGGCCAGTGATGTTGATTTGGACGCAGTAGCTCATATGACTGAGGGATTTAGTGGAGCTGATCTCCAAGCTCTACTCTCAGATGTGCAGCTTGCAGCAGTTCATGAAGTTCTGGACACTGTAAACATCTATGGGCCAGAGAAAAGACCAATTATTACAGACGCTCTTCTGAAGTTTACTGCCTCCCGGGCTAGACCATCTGTTTCAGAAGAAGATAAACGAAGACTTTATAGTATTTACAGCCAGTTCCTGGATTCAAAGAGATCCGTTGCTGCTCAGTCAAGAGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 1551 0.4397 MGQSLFQRVGFAYNNKGRGVWRSGMFGRVVAAYSASQRILQCCISFGFDTQRLLDHESYENRAVYLLIPIDGVQVGDPNPERRQKSCGFGPIAFIASVQSLEKIPQSLSSSGRFDFHIQLPTPAASERGAMLKHEVQKRHLQCADDILLNVAVKCDGYDGYDLEILVDRAVHAAVCRFLPSNAALNEHDCPALLMEDFSQAMHDFLPVAMRDITKSASDGGRSGWDDVGGLVDIRNAIKEMIELPSKFPKIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFFDFPSWRERLEILTVLSRKLPMASDVDLDAVAHMTEGFSGADLQALLSDVQLAAVHEVLDTVNIYGPEKRPIITDALLKFTASRARPSVSEEDKRRLYSIYSQFLDSKRSVAAQSRDAKGKRATLA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3254 516 Gene3D - 224 486 IPR027417 -
Glsi11g3254 516 ProSitePatterns AAA-protein family signature. 363 381 IPR003960 GO:0005524|GO:0016887
Glsi11g3254 516 FunFam Nuclear valosin-containing protein-like 221 399 - -
Glsi11g3254 516 SMART AAA_5 259 395 IPR003593 GO:0016887
Glsi11g3254 516 Gene3D - 394 473 - -
Glsi11g3254 516 Pfam ATPase family associated with various cellular activities (AAA) 263 391 IPR003959 GO:0005524|GO:0016887
Glsi11g3254 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 182 IPR027417 -
Glsi11g3254 516 Pfam AAA+ lid domain 415 452 IPR041569 -
Glsi11g3254 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 486 IPR027417 -
Glsi11g3254 516 CDD RecA-like_PEX1_r2 234 390 - -
Glsi11g3254 516 PANTHER AAA-FAMILY ATPASE 61 490 - -
Glsi11g3254 516 FunFam Peroxisome biogenesis protein 1 124 204 - -
Glsi11g3254 516 Gene3D - 53 122 IPR027417 -
Glsi11g3254 516 Gene3D - 123 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3254 Glsi-ChrGlsi11 41636738 41657224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3254 196 454 Calmodulin-binding Proteins AT3G56690 44.061 6.53e-66 228