Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3252 ATGAAGGAGGGTGAAAGGAAGCAAGGCGCACCTTCACCCTGTGCTGCATGCAAGCTGCTTCGAAGAAGGTGTTCCCAGGATTGTGTCTTTGCTCCCTATTTCCCTGCGGATGAGCCTCACAAGTTTGCTAATGTGCACAAAGTGTTTGGTGCCAGTAATGTCAACAAGAAGCTTCAGGAGCTCCCGGTGCATCAGCGGGGAGATGCCGTGAGCAGCATGACTTATGAAGCTAACGCTAGGGTGCGAGACCCTGTTTATGGATGCGTTCGTGCAATTTCTTCTCTACAACAACTACTTGATGTGCTACAGACCCAATTGGCCCTGGCCCAGGCTGAGGTGGTGCAACTTCAGATGCGCCCCACAGGATGCTTATCCAACGTCGGCCTTAGCCCAACTACTAGTGGGTCTCTATCATCCAAGATCATGGATTCACAAGCCAAGCCTATATTTGACATCCATGTGTTGATGGACCAAGCCAGTTTTGGTGATTCAATGTGGTCATGCTAG 507 0.5049 MKEGERKQGAPSPCAACKLLRRRCSQDCVFAPYFPADEPHKFANVHKVFGASNVNKKLQELPVHQRGDAVSSMTYEANARVRDPVYGCVRAISSLQQLLDVLQTQLALAQAEVVQLQMRPTGCLSNVGLSPTTSGSLSSKIMDSQAKPIFDIHVLMDQASFGDSMWSC 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3252 168 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Glsi11g3252 168 Coils Coil 92 119 - -
Glsi11g3252 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 131 - -
Glsi11g3252 168 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3252 Glsi-ChrGlsi11 41433966 41483235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3252 1 168 AS2 family AT1G31320 67.442 7.67e-72 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Glsi11g3252 LOB 6.8e-41 No_clan