Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3242 ATGGCTCATTCAGCCGAACCATCCTCATCGTTGAGCTTTTCATCATCCTCCCATATATCAAATGGCTCAGTTAGCCAGAACATATACTCTTCTTATTGCTCTGATCCTGGGCCTAACCTCGAAGTGCTCAGTTTGAGTAAGCTTAGCTCTAATTTGGGGCATCTTTTGGTTGATTCTGATTGTGATTACAGTGATGCTGACATCATGGTTGAGGGAATTTCAATTGGTGTTCATCGATGTATTCTTGCCTCTAGAAGTAAGTTTTTTTTTGAGTTATTCAAGAGGGAGAAAGGATCATCAGCGAAAGAAGGCAAATTAAAGTATTGCATGAGTAATTTGTTGCCTTATGGCAAGGTCGGGTATGAAGCCTTCATCATATTTTTGGGATATTTGTATACTGGGAAGCTCAAGCCCTCTCCAATGGAGGTATCAACTTGTGTTGACAATGTTTGTGCCCATGATGCATGTGGACCTGCGATTAACTTTTCTGTAGAGTTGATGTATGCCTCTTCCATTTTTCAAATACTAGAGCTGATATCGATTTTCCAGCGACGTCTTCTTAACTTTGTACGGAAGGCTCTTGTGGAAGATGTCATACCAATCCTCATTGTTTCTTTCCATTGTCAATTGGGTCAGCTTGTCACTCAATGCATTGATAGGGTGGCACGATCACACCTTGACTATGTCTCAATTGAGAAAGAAGTTCCCCTTGAACTCTCAGAAAAAGTTAAATTGCTACGATGCAGCTCTCAGCATGATGTTGAAAATAATGGTTCTTTAGTGGATCCATTGCATCAAAAGAGAATAACTAGAATACATAAGGCATTGGACTCAGATGACGTTGAGCTTCTTAAACTTCTTTTAACTGAGTCAGATATAACTTTGGATGAAGCCAATGCTCTTCATTATGCTGCAGCCTACTGTGATCCTAAGGTTGTCTCTGAGGTACTTTGTTTGGGTCTGGCTGATGTCAACCTTCGGAATTCTCGGGGATACACTGTGCTTCATATTGCTGCCATGCGCAAAGAGCCTTCTGTTATAGTATCACTTCTTACAAAAGGGGCTTGCGCATCAGAATTGACTTTGGATGGTCAAAGTGCTGTTAGTATCTGCAGGAGGTTGACCAGGCCAAAGGATTATCATGCAAAAACAGAACAGGGGAAGGAAACAAACAAAGATCGAATATGTATTGATGTTCTTGAAAGAGAAATGCGGAGGAATCCAATGGCTAGGGATGCCTCTATGTCTCCCCAAACAATGGCTGATGATCTGCACATGAAGCTGCTATATCTTGAGAACAGAGTGGCATTTGCAAGGTTGTTCTTCCCTACGGAAGCCAAACTAGCCATGGACATTGCACATGCTGAGACAACATCCGAGTTTGCAGGTCTTTCTACAACAAAAGGTTCAAGTGGGAATTTCAGGGAGGTTGATCTTAATGAGACTCCGATAATGCAAAACAGAAGACTTCTTTCTAGGATGGAAGAACTAATGAAAACAGCGGAGATGGGCCGGCGTTACTTTCCTCATTGCTCGGAAGTGCTGGATAATTTCATGGAGGATAACCTGCCTGATTTATTTTACCTTGAGAAGGGCACCCAGGATGAGCAGAGAATCAAGAGGATGCGTTTTGTGGAGCTTAAAGATGATGTTCAAAAGGCTTTCAACAAGGACAAAGCTAAGTACTGCCGTTCTGGGATTTCCCCTTCATCATCCTCATCATCCCTTAAAGACTCTGGTCATCACAAGGCTAGAAAGGTGTAA 1764 0.4212 MAHSAEPSSSLSFSSSSHISNGSVSQNIYSSYCSDPGPNLEVLSLSKLSSNLGHLLVDSDCDYSDADIMVEGISIGVHRCILASRSKFFFELFKREKGSSAKEGKLKYCMSNLLPYGKVGYEAFIIFLGYLYTGKLKPSPMEVSTCVDNVCAHDACGPAINFSVELMYASSIFQILELISIFQRRLLNFVRKALVEDVIPILIVSFHCQLGQLVTQCIDRVARSHLDYVSIEKEVPLELSEKVKLLRCSSQHDVENNGSLVDPLHQKRITRIHKALDSDDVELLKLLLTESDITLDEANALHYAAAYCDPKVVSEVLCLGLADVNLRNSRGYTVLHIAAMRKEPSVIVSLLTKGACASELTLDGQSAVSICRRLTRPKDYHAKTEQGKETNKDRICIDVLEREMRRNPMARDASMSPQTMADDLHMKLLYLENRVAFARLFFPTEAKLAMDIAHAETTSEFAGLSTTKGSSGNFREVDLNETPIMQNRRLLSRMEELMKTAEMGRRYFPHCSEVLDNFMEDNLPDLFYLEKGTQDEQRIKRMRFVELKDDVQKAFNKDKAKYCRSGISPSSSSSSLKDSGHHKARKV 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3242 587 SMART ANK_2a 330 362 IPR002110 GO:0005515
Glsi11g3242 587 SMART ANK_2a 296 326 IPR002110 GO:0005515
Glsi11g3242 587 SMART ANK_2a 267 295 IPR002110 GO:0005515
Glsi11g3242 587 Gene3D Potassium Channel Kv1.1; Chain A 40 223 IPR011333 -
Glsi11g3242 587 FunFam Regulatory protein NPR3 38 222 - -
Glsi11g3242 587 CDD BTB_POZ_NPR_plant 55 190 - -
Glsi11g3242 587 Gene3D - 264 404 IPR036770 -
Glsi11g3242 587 SMART BTB_4 64 190 IPR000210 GO:0005515
Glsi11g3242 587 Pfam Domain of unknown function (DUF3420) 226 273 IPR024228 -
Glsi11g3242 587 FunFam regulatory protein NPR3-like 264 404 - -
Glsi11g3242 587 Pfam Ankyrin repeats (many copies) 299 343 IPR002110 GO:0005515
Glsi11g3242 587 SUPERFAMILY POZ domain 53 188 IPR011333 -
Glsi11g3242 587 Pfam NPR1/NIM1 like defence protein C terminal 372 574 IPR021094 -
Glsi11g3242 587 PANTHER REGULATORY PROTEIN NPR3 10 579 IPR044292 GO:0009862|GO:2000022|GO:2000031
Glsi11g3242 587 MobiDBLite consensus disorder prediction 563 587 - -
Glsi11g3242 587 Pfam BTB/POZ domain 62 143 IPR000210 GO:0005515
Glsi11g3242 587 ProSiteProfiles Ankyrin repeat region circular profile. 330 355 - -
Glsi11g3242 587 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Glsi11g3242 587 ProSiteProfiles Ankyrin repeat profile. 330 355 IPR002110 GO:0005515
Glsi11g3242 587 SUPERFAMILY Ankyrin repeat 260 373 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3242 Glsi-ChrGlsi11 39851794 39862535 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Glsi11g3242 NPR1_like_C 2.5e-92 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g3242 11 39851794 39862535 Glsi11g3242 11 39851794 39862535 ECH