Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3231 ATGGCGCCGAGCATAACAGACCTACAGCTAACTCCTCTTGCCGGTGGCCGAAAAACCTCTTCCGCCGCAACTGCCGCCGACGATCCCGGTGATCTCGAAGATGTTCGGCTGTTGGACTCTTATGACAAAATTGATTACTCCTATGGATCTGAAGAAGGAATCAAGCGAATTCAGGTCAGAGTCTCTGGCATGACCTGCGCTGCTTGCTCCAATTCCGTCGAAGCAGCTCTCAAGGCCGTTGATGGCGTGCTCAGTGCCTCTGTGGCTCTGCTTCAGAACACGGCTGACGTCGTGTTCAACTCAAGTCTGGTCAAGGATGAAGACATTAAAAATGCAATTGAAGATGCAGGGTTTGAAGCAGACATATTACCTGAACCCAATACATTTGGAACAAAGTCCCAAGAAACCCTGGTGGGACAGTTCACAATTGGGGGTATGACATGCGCAGCCTGTGTAAATTCTGTTGAAGGTATTTTGAGGAATCTTTCAGGGGTCAAAAAGGCTGTGGTAGCTTTGGCTACATCCTTAGGAGAAGTTGAATATGATCCAACTGTAATTAGTAAAGATGATATTGTCAATGCAATTGAAGATGCTGGTTTTGAAGCCTCATTTGTACAGAGTAGTGAGCAAGATAAAGTAATTTTAGGGGTTGATGGTTTATACAGCCTGATTGATGCACAAGTTCTAGAAAGCATGCTCAGCAGCATGAAAGGAGTAAGGCAGTTTCGTGTTGACCAGATATCAAGTCAACTGGAAGTTCTTTTTGATCCTGAAGTTCTCAGTTCTAGATCCTTAGTTGATGGGATTGAAGGGGGAAGCAATGGGATGTTTAAATTACATGTTAGAAGCCCTTATGCAAGAATGGCCTCTAAAGATGTTGAAGAGACCTCAACTATGTTTTGGCTTTTTGTCTCAAGCCTGTTTCTTAGTATTCCTCTCTTTCTCATAGGTGTAGTTTGTCCTCATATACCAGTGGTGTATTCCTTACTACTTTGGAGATGTGGGCCTTTCCTCATGGATGATTGGTTGAAGTGGGCATTAGTGAGTCTTATCCAATTTGTGGTTGGGAAGCGCTTCTACATTGCTGCTGGCAGAGCTCTTAGAAATGGTTCAACTAACATGGATGTCTTGGTTGCTTTGGGAACTACAGCCTCTTATGCCTATTCTGTGTGCGCTCTTCTTTATGGTGCTCTTACTGGATTTTGGTCTCCAACATATTTTGAAACAAGTGCCATGCTCATAACATTTGTATTGTTGGGGAAGTATTTGGAATGTCTTGCCAAGGGAAAGACATCGGATGCTATCAAGAAGTTAGTAGAACTTGCTCCTGCAACAGCTTTATTGGTAGTCAAAGACAAAGGTGGTAAGCCTGTTGAAGAAAGGGAAATAGATTCTTTGCTCATTCAGCCCGGTGACACATTAAAAGTTCTTCCTGGTACAAAGATTCCTGCTGATGGTATCGTTATGTGGGGCTCAAGTTATGTAAATGAGAGCATGGTAACTGGTGAATCGATACCTGTTTTAAAGGAGGTGAATGCATCCATTATTGGAGGTACTATAAATTTACATGGCGTCCTTCACATTCAAGCTACCAAAGTAGGAACTGATACAGTTTTGAGTCAGATAATTAGTTTGGTAGAGACAGCCCAGATGTCCAAAGCTCCAATTCAGAAATTTGCTGATTATGTAGCAAGCATATTTGTTCCTACAGTTGTTGCTTTGGCATTGTTAACATTATTGAGTTGGTATATTGCCGGAGTTCTAGGAGCTTACCCAGAAGAATGGTTGCCAGAAAATGGAAATCACTTTGTTTTTGCCCTAATGTTTTCAATATCTGTAGTGGTTATTGCATGTCCCTGTGCACTAGGCTTGGCAACACCAACTGCTGTCATGGTGGCAACAGGGGTTGGGGCTAATAATGGAGTGTTAATTAAAGGAGGAGATGCCTTGGAAAAGGCTCAGATGGTGAAGTATGTCATATTTGATAAAACAGGCACTCTCACTCAGGGAAAGGCGACTGTCACTACTGCCAAGGTATTCACAGGAATGGATTGTGGAGAGTTTCTTACATTGGTGGCTTCTGCAGAGGCTAGCAGTGAACATCCACTGGCAAAAGCAATAGTAGAACATGCACGCCATTTTCATTTCTTTGAAGAGTCGTCTACAGCCACTGGTGTCCAAGATGATGCCAAGGACTTAAAGGCCGGATGGCTTTTTGATGTCTCAGACTTCTCTGCCCTTCCAGGAAGAGGTGTCCGGTGCTTTATAGATGGGAAGCTTATTTTGGTTGGTAACAGGAAGCTAATGGTAGAAAGTGGCATAAATATTCCAACCCAAGTGGACAATTTTGTGGTGGAGTTGGAAGAAAGTGCAAACACAGGGATACTGGTTGCATATGATGATATATTAACAGGTGTTATAGGGGTTGCGGACCCAGTAAAGAGAGAAGCTTCTGTGGTCATAGAGGGCCTCCAGAAAATGGGTGTCAGACCTGTTATGGTTACAGGAGATAATTTGAGAACAGCTAAAGCTGTTGCCAAGGAGGTTGGCATGGAAGATGTCAGGGCAGAGGTTATGCCTGCAGGAAAGGCTGAGGTTGTTCGTTCATTCCAAGAAGATGGAAGCATAGTTGCAATGGTGGGTGATGGTATCAATGACTCTCCTGCATTAGCTGCTGCAGATGTTGGAATGGCAATTGGGGCTGGGACAGATATTGCAATAGAAGCTGCTGACTATGTGTTGATGAGAAATAATTTGGAAGATGTGATCACAGCCATTGATCTCTCCAGGAAGACCTTTTCTCGAATTCGATTGAATTATGTATTTGCAATGGCTTACAATGTCATTGCTATACCAGTTGCTGCCGGGGTTTACTATCCTTCACTAGGGATCAAACTGCCACCATGGGTTGCTGGTGCATGCATGGCTCTCTCATCTGTGAGTGTTGTGTGCTCTTCTTTGCTTCTCAGGAGATATAGAAGACCCAGACTAACTACAATACTTGAAATAACTGTAGAGTAA 3021 0.435 MAPSITDLQLTPLAGGRKTSSAATAADDPGDLEDVRLLDSYDKIDYSYGSEEGIKRIQVRVSGMTCAACSNSVEAALKAVDGVLSASVALLQNTADVVFNSSLVKDEDIKNAIEDAGFEADILPEPNTFGTKSQETLVGQFTIGGMTCAACVNSVEGILRNLSGVKKAVVALATSLGEVEYDPTVISKDDIVNAIEDAGFEASFVQSSEQDKVILGVDGLYSLIDAQVLESMLSSMKGVRQFRVDQISSQLEVLFDPEVLSSRSLVDGIEGGSNGMFKLHVRSPYARMASKDVEETSTMFWLFVSSLFLSIPLFLIGVVCPHIPVVYSLLLWRCGPFLMDDWLKWALVSLIQFVVGKRFYIAAGRALRNGSTNMDVLVALGTTASYAYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGKPVEEREIDSLLIQPGDTLKVLPGTKIPADGIVMWGSSYVNESMVTGESIPVLKEVNASIIGGTINLHGVLHIQATKVGTDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVALALLTLLSWYIAGVLGAYPEEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALEKAQMVKYVIFDKTGTLTQGKATVTTAKVFTGMDCGEFLTLVASAEASSEHPLAKAIVEHARHFHFFEESSTATGVQDDAKDLKAGWLFDVSDFSALPGRGVRCFIDGKLILVGNRKLMVESGINIPTQVDNFVVELEESANTGILVAYDDILTGVIGVADPVKREASVVIEGLQKMGVRPVMVTGDNLRTAKAVAKEVGMEDVRAEVMPAGKAEVVRSFQEDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVIAIPVAAGVYYPSLGIKLPPWVAGACMALSSVSVVCSSLLLRRYRRPRLTTILEITVE 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3231 1006 FunFam Copper-transporting ATPase RAN1 667 759 - -
Glsi11g3231 1006 SUPERFAMILY Calcium ATPase, transmembrane domain M 394 954 IPR023298 -
Glsi11g3231 1006 ProSitePatterns Heavy-metal-associated domain. 143 172 IPR017969 GO:0046872
Glsi11g3231 1006 NCBIfam HAD-IC family P-type ATPase 413 719 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g3231 1006 NCBIfam HAD-IC family P-type ATPase 779 963 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g3231 1006 Gene3D - 627 937 IPR023214 -
Glsi11g3231 1006 Gene3D - 428 550 - -
Glsi11g3231 1006 SFLD C1.7: P-type atpase like 642 932 - -
Glsi11g3231 1006 FunFam Copper-exporting P-type ATPase A 53 123 - -
Glsi11g3231 1006 SUPERFAMILY HMA, heavy metal-associated domain 52 126 IPR036163 GO:0046872
Glsi11g3231 1006 NCBIfam heavy metal translocating P-type ATPase 374 989 IPR027256 GO:0006812|GO:0016020|GO:0019829
Glsi11g3231 1006 PRINTS Copper-transporting ATPase 1 signature 56 81 - -
Glsi11g3231 1006 PRINTS Copper-transporting ATPase 1 signature 111 131 - -
Glsi11g3231 1006 PRINTS Copper-transporting ATPase 1 signature 82 105 - -
Glsi11g3231 1006 CDD HMA 58 120 IPR006121 GO:0046872
Glsi11g3231 1006 FunFam Probable copper-transporting ATPase HMA5 771 937 - -
Glsi11g3231 1006 FunFam Copper-transporting ATPase 1, putative 428 550 - -
Glsi11g3231 1006 Pfam Heavy-metal-associated domain 59 119 IPR006121 GO:0046872
Glsi11g3231 1006 Pfam Heavy-metal-associated domain 141 201 IPR006121 GO:0046872
Glsi11g3231 1006 Pfam E1-E2 ATPase 443 639 - -
Glsi11g3231 1006 PRINTS P-type cation-transporting ATPase superfamily signature 827 837 - -
Glsi11g3231 1006 PRINTS P-type cation-transporting ATPase superfamily signature 903 915 - -
Glsi11g3231 1006 PRINTS P-type cation-transporting ATPase superfamily signature 496 510 - -
Glsi11g3231 1006 PRINTS P-type cation-transporting ATPase superfamily signature 660 674 - -
Glsi11g3231 1006 PRINTS P-type cation-transporting ATPase superfamily signature 880 899 - -
Glsi11g3231 1006 PRINTS P-type cation-transporting ATPase superfamily signature 805 816 - -
Glsi11g3231 1006 Gene3D - 139 204 - -
Glsi11g3231 1006 CDD HMA 140 203 IPR006121 GO:0046872
Glsi11g3231 1006 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 50 1002 - -
Glsi11g3231 1006 SUPERFAMILY HMA, heavy metal-associated domain 208 271 IPR036163 GO:0046872
Glsi11g3231 1006 ProSiteProfiles Heavy-metal-associated domain profile. 55 121 IPR006121 GO:0046872
Glsi11g3231 1006 NCBIfam copper ion binding protein 140 202 IPR006122 GO:0005507
Glsi11g3231 1006 NCBIfam copper ion binding protein 57 120 IPR006122 GO:0005507
Glsi11g3231 1006 Gene3D - 667 759 IPR023299 GO:0000166
Glsi11g3231 1006 Gene3D - 760 811 IPR023299 GO:0000166
Glsi11g3231 1006 FunFam Copper-exporting P-type ATPase 760 811 - -
Glsi11g3231 1006 SUPERFAMILY HAD-like 659 986 IPR036412 -
Glsi11g3231 1006 ProSitePatterns Heavy-metal-associated domain. 61 91 IPR017969 GO:0046872
Glsi11g3231 1006 SUPERFAMILY Calcium ATPase, transduction domain A 460 546 IPR008250 -
Glsi11g3231 1006 Gene3D - 54 125 - -
Glsi11g3231 1006 ProSiteProfiles Heavy-metal-associated domain profile. 137 203 IPR006121 GO:0046872
Glsi11g3231 1006 CDD P-type_ATPase_Cu-like 301 976 - -
Glsi11g3231 1006 SFLD p-type atpase 642 932 IPR044492 -
Glsi11g3231 1006 ProSitePatterns E1-E2 ATPases phosphorylation site. 662 668 IPR018303 -
Glsi11g3231 1006 FunFam Copper-exporting P-type ATPase A 135 205 - -
Glsi11g3231 1006 Pfam haloacid dehalogenase-like hydrolase 656 894 - -
Glsi11g3231 1006 SUPERFAMILY HMA, heavy metal-associated domain 137 208 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3231 Glsi-ChrGlsi11 38899065 38905302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3231 1 1006 Primary Pumps ATPases AT5G44790 74.705 0.0 1508