Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3208 ATGGGTGCTCCTAAGCAGAAATGGACACCAGAAGAAGAAGCAGCACTCAAAGCTGGAGTTGTTAAGCATGGGGTTGGGAAATGGCGGACAATACTTAAAGATCCAGAGTTTAGTAGTGTCTTGTATCTGCGGTCTAATGTAGATCTCAAGGATAAATGGAGAAATCTGAGTGTGATGGCAAATGGATGGAGCTCCAGAGATAAGTCTAGATTAGCTGTTAGAAGGGTGCAACAGGTCCCAAAACAGGATGAGAACCCTCTGACTGCTACTTCTGTTATTCCGAGTGATGAAGAAATTATGGATGTCAAGGCTCTTCAAGTTTCTCGAGATATGCTGCAAATTACTGGTCCTAAGAGGTCTATTGTTAGGTTGGATAACCTTATAATGGAAGCAATAACTAGCTTGAAGGAGTCTGGCGGTTCCAACAAGACAAATATTGCAGCTTACATAGAGGACCAATATTGGGCACCTTCAGACTTAAGAAGGTTGTTGTCAGCAAAATTGAAATCTTTGACAGCTAGTGGAAAACTGATCAAGGTAAAACGCAAATATAGGATTGCACCTACTCCAGCATATTCTGAAAGAAGACGAAACTCATCCATGTTATTGTCTGACGCAAGGCAGAGATTCTCTATGAAGGTTGATAAAGACGAGGCTAATGTGATTACTAAGTCTCAGATAGATTTAGAATTAGCAAAGTTAAGGTCTATGACTGCACAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCTGCCATAGCAGAAGCTGAAGAAGCAGCAAGGGAGGCAGAGGCAGCAGAAGCTGATGCAGAGGCAGCACAAGCTTTTGCAGAAGCTGCAATGAAGACACTTAGTGGGAGAAACACCCCAAAAATGAGGCAGTCGATAGAGCTGATGCGAGCTTGA 918 0.4357 MGAPKQKWTPEEEAALKAGVVKHGVGKWRTILKDPEFSSVLYLRSNVDLKDKWRNLSVMANGWSSRDKSRLAVRRVQQVPKQDENPLTATSVIPSDEEIMDVKALQVSRDMLQITGPKRSIVRLDNLIMEAITSLKESGGSNKTNIAAYIEDQYWAPSDLRRLLSAKLKSLTASGKLIKVKRKYRIAPTPAYSERRRNSSMLLSDARQRFSMKVDKDEANVITKSQIDLELAKLRSMTAQEAAAVAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQAFAEAAMKTLSGRNTPKMRQSIELMRA 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3208 305 PANTHER SINGLE MYB HISTONE 4 1 292 IPR044597 GO:0003691
Glsi11g3208 305 SMART sant 4 59 IPR001005 -
Glsi11g3208 305 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi11g3208 305 SUPERFAMILY "Winged helix" DNA-binding domain 117 197 IPR036390 -
Glsi11g3208 305 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi11g3208 305 Coils Coil 243 280 - -
Glsi11g3208 305 Gene3D - 118 197 IPR036388 -
Glsi11g3208 305 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Glsi11g3208 305 FunFam Telomere repeat-binding factor 1 2 58 - -
Glsi11g3208 305 FunFam Telomere repeat-binding factor 1 118 198 - -
Glsi11g3208 305 FunFam Telomere repeat-binding factor 1 8 86 - -
Glsi11g3208 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Glsi11g3208 305 Gene3D - 2 59 - -
Glsi11g3208 305 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Glsi11g3208 305 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Glsi11g3208 305 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi11g3208 305 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3208 Glsi-ChrGlsi11 36346021 36371573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3208 1 296 Single Myb Histone (SMH) Gene Family AT1G49950 66.556 2.78e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi11g3208 Linker_histone 7.5e-09 CL0123