Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3195 ATGATGACGTCCCGTTCGGGGAATAATAGCGGCAGCAGGACCCGTGTGGGGAAGTACGAGCTCGGTCGGACCCTTGGAGAGGGCAATTTTGCTAAGGTAAAGTTTGCTCGGCACGCTGAGACCGGAGAAAATGTGGCCATCAAAATTCTTGACAAAGAAAAAGTTCTCAAGCACAAAATGATTGGCCAGATAAAACGAGAAATTTCAACAATGAAACTGATAAGACATCCAAATGTCATACGCATGTATGAGGTAATGGCTAGCAAAACGAAGATATACATTGTATTGGAATTTGTTACTGGAGGGGAACTGTTTGATAGAATTGCAAGCAAGGGGAGGTTGAAAGAAGATGAAGCCAGAAAATATTTTCAGCAGCTTATTTGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTTCCATAGAGACCTAAAGCCTGAGAATTTGTTGCTGGATGCTAGTGGGGTGCTAAAAGTATCAGATTTTGGATTAAGTGCATTGCCTCAACAAGTTCGAGAGGACGGGTTGCTTCACACAACATGTGGTACGCCAAATTATGTTGCCCCAGAGGTGATCCACAACAAAGGATATGATGGTGCAAAGGCCGATCTTTGGTCATGTGGTGTTATTCTTTTTGTTTTAATGGCTGGCTATCTGCCTTTCGAAGAAAACAATCTTGTGGCTTTATATAAAAAGATATTCAAAGCTGATTTCACGTGTCCTCCATGGTTCTCTGCAAGTGCAAAGAAATTAATCAAGAAAATCCTTGATCCCAATCCTGCTACAAGGATTACTATTGCTGAGCTCATTGAGAATGAGTGGTTTAAGAAGGGATATATGCCTCCTAGATTTGAGCAGGCCAATGTCAGTCTTGATGATGTAGATGCTATTTTTGGTGAATCATCGGATTCTGAAAATCTTGTTGTAGAGAAGCGGGAAGAGGGGCCTGCAGCACCTATAACTATGAATGCATTTGAACTCATCTCTACTTCCCAGGGCCTCAACCTTAGTAGTCTTTTTGAGAAGCAAATGGGACTTGTTAAAAGGAAAACAAGATTCACATCCAAATGTTCAGCAAATGAGATAATTTCAAAAATTGAGCAAGCTTCAATGCCGCTGGGTTTTGATGTTAAGAAGAACAACTATAAGTTGAAGATTCAAGGGGAGAAGACTGGACGTAAAGGTCATCTATCTGTAGTGACTGAGATCTTTGAGGTGGCCCCTTCACTTTACATGGTTGAACTTCGCAAGGCTGGAGGAGATACTTTGGAATTTCACAAGTTCTACAAGAACCTATCTCCCGGGCTGAAAGATATTGTTTGGAAAGCAGAGCCTATTGATGAAGAAGCAGATGGTGCTAGTGCATCAACATAA 1371 0.4158 MMTSRSGNNSGSRTRVGKYELGRTLGEGNFAKVKFARHAETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDRIASKGRLKEDEARKYFQQLICAVDYCHSRGVFHRDLKPENLLLDASGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIHNKGYDGAKADLWSCGVILFVLMAGYLPFEENNLVALYKKIFKADFTCPPWFSASAKKLIKKILDPNPATRITIAELIENEWFKKGYMPPRFEQANVSLDDVDAIFGESSDSENLVVEKREEGPAAPITMNAFELISTSQGLNLSSLFEKQMGLVKRKTRFTSKCSANEIISKIEQASMPLGFDVKKNNYKLKIQGEKTGRKGHLSVVTEIFEVAPSLYMVELRKAGGDTLEFHKFYKNLSPGLKDIVWKAEPIDEEADGASAST 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3195 456 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165
Glsi11g3195 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Glsi11g3195 456 CDD STKc_SnRK3 18 273 - -
Glsi11g3195 456 Pfam Protein kinase domain 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g3195 456 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 436 - -
Glsi11g3195 456 FunFam Non-specific serine/threonine protein kinase 315 441 - -
Glsi11g3195 456 ProSiteProfiles Protein kinase domain profile. 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g3195 456 Gene3D Transferase(Phosphotransferase) domain 1 99 279 - -
Glsi11g3195 456 Pfam NAF domain 319 378 IPR004041 GO:0007165
Glsi11g3195 456 Gene3D Kinase associated domain 1, KA1 316 441 - -
Glsi11g3195 456 Gene3D Phosphorylase Kinase; domain 1 8 98 - -
Glsi11g3195 456 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Glsi11g3195 456 FunFam Non-specific serine/threonine protein kinase 12 314 - -
Glsi11g3195 456 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Glsi11g3195 456 CDD CIPK_C 322 437 - -
Glsi11g3195 456 SUPERFAMILY Protein kinase-like (PK-like) 16 287 IPR011009 -
Glsi11g3195 456 SMART serkin_6 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3195 Glsi-ChrGlsi11 34005875 34043493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3195 1 448 CBL-interacting serine-threonine protein kinases AT1G01140 69.163 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi11g3195 Pkinase 2.2e-75 CL0016