Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3172 ATGGAGGATTCTGAAGGAGTCCTCAGCTTTGATTTCGAGGGCGGCCTCGATAGTGCTCCCGCCAACCCCGCCGCGCCATCCGGACCTCTGGTACAACCTGATTCTTCTGCCGCTGCTTCCACCGTAGCCAATGGTGTCGCACACGGGGCGCCCGAGCCGGCGCCGGGCAATATCCCTGGGCGGCGGAGCTTCCGTCAGACGGTGTGCCGGCACTGGCTTCGTGGCCTCTGCATGAAGGGCGATGCCTGCGGCTTCTTACATCAGTATGACAAAGCGCGGATGCCCGTGTGCCGATTTTTTAGATTGTACGGGGAGTGCCGCGAGCAGGATTGCGTGTATAAGCACACCAATGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCCAATGGGCCTGATTGCAGGTATAGGCATGCAAAAATGCCTGGACCTCCACCTCCTGTTGAAGAGGTGCTTCAAAAGATTCAGCATTTATATTCTTACAATTATGGTTCTTCTAACAAATTTTTCCAACAAAGAGGTGCTGGTTATCCTCAACAAGCTGAGAAATCTCAGTTTCCACAAGGTCCTAATTCTACAAACCAAGCTGTGCCTGGAAAGCCATTAACCGCAGAGTCAGGTAATGTCCAGCAGCAGCAGCAGCAACAACAACAAGTGCAACAGTCTCAGCAGCAGGTTAACCAGATTCAAATGCAAAATGCTTCTAATGGCCAGCCCAGTCAAGCAAACAGAACTGCGATCCCATTACCACAAGGAGTATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGCTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAGGCTAAACTTAATGAAGCATTTGATTCTGTGGAAAATGTGATATTGCTTTTCTCAGTCAACCGAACTCGACATTTTCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGAAACTGGAAATATGCACATGGAACTGCACATTATGGCCGTAACTTCTCAGTTAAATGGTTAAAGTTATGTGAACTGTCATTCCACAAAACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAGCCCTCTATTGGTGAGCAGTTGGCCTCCTTGCTTTATCTTGAGCCAGATAGTGAACTTATGGCTATCTCACTTGCGGCAGAGTCTAAGCGAGAAGAAGAAAAAGCAAAGGGAGTAAATCCAGATAATGGAGGAGAAAATCCAGATATTGTCCCATTTGAGGACAATGAAGAAGAAGAAGAGGAAGAAAGTGACGAAGAAGAGGAGAGCTTTGGCCATGGTGTTGGGCCCACTCCTCAAGGCAGAGGTAGGGGCAGAGGTATGATGTGGCCTCCTCATATGCCTATGGGACGTGGAGCTAGACCTATTCCTGGAATGCAGGGTTTTCCCCCGGTAATGATGGGTGATGGATTATCCTATGGACCTGTTACACCTGATGGATTTGGTATGCCCGATCTTTTTGGTATGGGGCCTCGAGGCTTTGCTCCATATGGTCCTAGGTTCTCTAATGATTTTGCAGGCCCCCCAGCAGCCATGATGTTTCGTGGGCGACCCTCACAACCTGGGATGTTTCCAGGTGGTGGGTTTGGGATGATGATGAATACAGGACGTGGTCCCTTTATGGGGGGGATGGGGGTTGCAGGTGCAAATCCACCAAGAGCTGGTCGGCCTGGTGGTATGCCTCCCATGCTTCCACCACCACCACCTCTACCTCAGAATACCAACCGTGGTCCTAAGAGAGATCATAGAACTAATGATAGGTATGGTTCAGGATTAGATCAAGGCAAGGGTCAAGACTTGAGTCAAAGTGGAGGACCTGATGATGACATGCAATATCAGCAAGGATACAACGTACACCAGGAAGATCAGTATGCTGCTGTGAACAACTTCAGGAATGAGGAGAGTGAAAGTGAGGATGAGGCACCTCGACGGTCAAGACATGGAGAGGGAAAAAAGAAAAGGCGAAGTTTAGAAGATGCTAACCCGGGCTCCAATAACTAG 2082 0.4827 MEDSEGVLSFDFEGGLDSAPANPAAPSGPLVQPDSSAAASTVANGVAHGAPEPAPGNIPGRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKMPGPPPPVEEVLQKIQHLYSYNYGSSNKFFQQRGAGYPQQAEKSQFPQGPNSTNQAVPGKPLTAESGNVQQQQQQQQQVQQSQQQVNQIQMQNASNGQPSQANRTAIPLPQGVSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVILLFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISLAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPTPQGRGRGRGMMWPPHMPMGRGARPIPGMQGFPPVMMGDGLSYGPVTPDGFGMPDLFGMGPRGFAPYGPRFSNDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNTGRGPFMGGMGVAGANPPRAGRPGGMPPMLPPPPPLPQNTNRGPKRDHRTNDRYGSGLDQGKGQDLSQSGGPDDDMQYQQGYNVHQEDQYAAVNNFRNEESESEDEAPRRSRHGEGKKKRRSLEDANPGSNN 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3172 693 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 32 676 IPR045168 -
Glsi11g3172 693 SMART c3hfinal6 119 143 IPR000571 GO:0046872
Glsi11g3172 693 SMART c3hfinal6 63 89 IPR000571 GO:0046872
Glsi11g3172 693 SMART c3hfinal6 91 117 IPR000571 GO:0046872
Glsi11g3172 693 ProSiteProfiles YTH domain profile. 257 392 IPR007275 GO:0003723
Glsi11g3172 693 Gene3D - 59 121 - -
Glsi11g3172 693 SUPERFAMILY CCCH zinc finger 65 88 IPR036855 GO:0046872
Glsi11g3172 693 MobiDBLite consensus disorder prediction 431 449 - -
Glsi11g3172 693 MobiDBLite consensus disorder prediction 571 693 - -
Glsi11g3172 693 MobiDBLite consensus disorder prediction 409 470 - -
Glsi11g3172 693 MobiDBLite consensus disorder prediction 176 248 - -
Glsi11g3172 693 Pfam YT521-B-like domain 336 391 IPR007275 GO:0003723
Glsi11g3172 693 Pfam YT521-B-like domain 257 319 IPR007275 GO:0003723
Glsi11g3172 693 Coils Coil 215 235 - -
Glsi11g3172 693 CDD YTH 258 392 IPR007275 GO:0003723
Glsi11g3172 693 Gene3D ph1033 like domains 235 395 - -
Glsi11g3172 693 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Glsi11g3172 693 MobiDBLite consensus disorder prediction 582 601 - -
Glsi11g3172 693 MobiDBLite consensus disorder prediction 622 658 - -
Glsi11g3172 693 MobiDBLite consensus disorder prediction 659 686 - -
Glsi11g3172 693 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 59 119 - -
Glsi11g3172 693 MobiDBLite consensus disorder prediction 1 60 - -
Glsi11g3172 693 ProSiteProfiles Zinc finger C3H1-type profile. 63 90 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3172 Glsi-ChrGlsi11 32887453 32935278 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi11g3172 YTH 1.7e-44 CL0178