Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3159 ATGAAGTGGAAGAGTGGAATGAATGACAATGAACAAAAGTCACAGGAGCGGCATAACAGCTCTGGACATACGAAGGCAATGAATAGTCCCTTCAAAACTCCTATGTCTGCAAAAGGGGGAAGGAAATTCAATAAGTCAAAAGTTCTTGAGGAAGGCAGACCTGGTCCTCAGACATCCATATCAATGCTGGTAAATTCTGCTTCTTGCCTTCTTGGTTGCTGTACTGTGGCCATAATAGATTATGGTTTAATCAGGAAGTTTATGTTGGATTGCTGGTTCCCCTTCTCCTCTTGCTCCTGCTGTTCTTTCCACGAGAAAAAAGTGACAAAATTGTACCCGAACTTCACAGGTGCCCTGACAAAAAAGTTCATCACTTTGCTCAAGCATGCAGAGAATGGTATTCTCGACTTGAATAAAGCGGCACAAACTTTGGAGGTGCAAAAGAGGAGAATATATGACATAACTAATGTCTTGGAAGGCATTGGTCTAATTGAGAAAGAGCTAAAGAACAGAATACATTGGAAGGGATTTGATTCTTCAATGTCTGAGGAGATGGATGGTGATGTCTCTACGCTAAAGGCCCATGTTGAGAAACTTTCCTTGGAAGAGTTCACTTTAGATGATCAAATAAGGGAAATGCAGGAAAGACTGAGGAGTTTGAGTGAAGATGAAAACAACCAGAAGTGGCATTTTTTAACTGAAGAAGATATTACGGGCCTGCCTTGCTTGCAGGCAATTTTTCTTGAATTATACTTGTTCTTTAATGAAACTCTGATAGCAATTAAAGCTCCACATGGAACTACCCTAGAAGTCCCTTATCCTAAGGAAGTTGTTGACTATCCACAGAGGAGATATAGAATCATTCTTAGAAGCACAATGGATCCCATTGATGTCTATCTTGTCAGAACTGATGAACTGTTTTCTAGTCAATTTGAGGAGAAATTTGAAGAAGTGAATGGCGTTGAGCCCCACATGAGCTTTCCACTTGCTTTGGGTTCAGGGTCCAATGAACACCTAACAACAGGATTGGTTCCTGTTGAATGCAATGTGAAGGGACTTGACCATCAGGCTCAACTTCCTTCTCATACATGCTCTGATCTAAATTCTTCACAAGAGTTGGTTGGGGGGATGATGAAGATTGTTCCTTCAGATTTTGATAATGATACAGATTATTGGCTTTTATCGGATGCTGAAGTTAGCATTACAGATATAAACACAACTAGTGTTAATTGGAATGGGGCGGACATGCTTCATCTTGATTTTGGGATCATCTCAAGGCCACAAACTCCATCACCTAAGTTTGCTGAAGCGCCATTGATAGTGGGTAACTCTTCTCAGAGGTGA 1344 0.4092 MKWKSGMNDNEQKSQERHNSSGHTKAMNSPFKTPMSAKGGRKFNKSKVLEEGRPGPQTSISMLVNSASCLLGCCTVAIIDYGLIRKFMLDCWFPFSSCSCCSFHEKKVTKLYPNFTGALTKKFITLLKHAENGILDLNKAAQTLEVQKRRIYDITNVLEGIGLIEKELKNRIHWKGFDSSMSEEMDGDVSTLKAHVEKLSLEEFTLDDQIREMQERLRSLSEDENNQKWHFLTEEDITGLPCLQAIFLELYLFFNETLIAIKAPHGTTLEVPYPKEVVDYPQRRYRIILRSTMDPIDVYLVRTDELFSSQFEEKFEEVNGVEPHMSFPLALGSGSNEHLTTGLVPVECNVKGLDHQAQLPSHTCSDLNSSQELVGGMMKIVPSDFDNDTDYWLLSDAEVSITDINTTSVNWNGADMLHLDFGIISRPQTPSPKFAEAPLIVGNSSQR 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3159 447 Gene3D - 183 304 - -
Glsi11g3159 447 SUPERFAMILY E2F-DP heterodimerization region 189 303 IPR037241 -
Glsi11g3159 447 MobiDBLite consensus disorder prediction 1 20 - -
Glsi11g3159 447 SUPERFAMILY "Winged helix" DNA-binding domain 117 177 IPR036390 -
Glsi11g3159 447 Gene3D - 112 178 IPR036388 -
Glsi11g3159 447 Coils Coil 127 147 - -
Glsi11g3159 447 Pfam E2F/DP family winged-helix DNA-binding domain 117 176 IPR003316 GO:0005667|GO:0006355
Glsi11g3159 447 PANTHER TRANSCRIPTION FACTOR E2F 14 405 IPR015633 GO:0000978|GO:0006357
Glsi11g3159 447 SMART E2F_TDP_2 106 176 IPR003316 GO:0005667|GO:0006355
Glsi11g3159 447 FunFam E2F transcription factor 1 107 178 - -
Glsi11g3159 447 Pfam E2F transcription factor CC-MB domain 192 302 IPR032198 GO:0046983
Glsi11g3159 447 CDD E2F_DD 189 304 IPR032198 GO:0046983
Glsi11g3159 447 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3159 Glsi-ChrGlsi11 31496717 31499721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3159 2 446 E2F-DP Transcription Factor Family AT2G36010 47.577 2.11e-108 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Glsi11g3159 E2F_CC-MB 2.1e-26 No_clan