Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3152 ATGTCTATTATTGAAACTCCTACCGTGGATTATGTTCATCAGCACGGCGGGAACAACAACGATAACCACCGTGTCTCCTCAAAGCGCAAGTTGGATGATTATGGCGCTAACGATGAAGAGGAGAACTATTCTGATTTCTGTGACTTAGTATCAGTAAGAATGAGAAAAGAAGAACCCAAAGCTGTAAATTCCTGTAACTCTGACGCCGATGGGACTGTGTCAGATAGGGTATCCGATGCTCGTTCGATGTTGTATGGTTGTTCCTCCCGTTCAGAGTCAACTCGTTTATGGGCGGGATTGCAATTCTTCATTCGACTGATGTCAGAAGGTAAAACTATGGTAGTGCAAGCTTGTCCACAAGATACTGTGAGATCGATTCACGAAAGAATCCAAACAATTACGGGTATACCCGTATTTGAGCAGAGACTAATTTATAGGGGTAAGCAACTTCAGTGGGAACAGACTCTATTCGAGTGTTCCATTCAGAATGATGCCAATGTTCAATTGGTTGGGCGCATGCGCAGCACAGAACACCCTCAAGCTTGGCAGGTTATCAACGATATGATTTCCCTAATTTGCCGTCTCTGCAGGGGTGAAGTGGAACACGATGCTTTGAAAACTATCAAAGGACTAATGACTGATTACCTAAACATGACTCCGAGAATTGACAATGATTCTGCTTCTGGGTATTTCCAGATTTTTATGTCTTCATCTGCTCCGGCAGTGCTGGTTATGCTCTATATGTCGCCCTATCTAGGTAACAAAGAATGTGCTGATTGTTCTATTAGGCATTTTATGAGTTCCTGTCGCACTACCCTGTCTAAGTCGTTGCATACGCAGTGCGCACGTGTAGTGTTGGAATTCTGCAAATTGCTTAAAAGGGTGGGTTCTGAGGATCCTTTGTATGTCTCTTGTCGGAGTACATTTGGGTCTTTATTGGAGACTTCTAGTGTTTCCTATGGTTCTGAAAGTGGGAAGGGATTAATTTTAATTCAAGATATATTCCCGTTTGTTCGTGAGCTTGCAAATATATTGTTGCGGGATTTGGATAAGAGTATGGAATCTCCCACCAGTTTAGGGCCGTTGTTGAGTGATGTTCGGGATTTTACTGCATTCTTACTCCCTTTAAGGACTGGAATCAGGAAGCAACTAGCTTTCAAGAGTCCATTATCTTCTAAGACCGATGAAAAACATCATAAGCATCTCTTACTTGTGGAAGAGAATGAATATCTTCGACTTATATTTATTGAATTATTAAAGAAAATGGATCAGTGTCTTCATAAAATGAATGAATTCTTGGTTTCCAAGGAAAGAGTGGAGGGGGATATTCTGTATTCTGCATGGTCTAAGTATCTTTCCATCTTGAAGGAATTGTATCACCTTTCTAAGCTCTATGAGGGAGCTGAAGAAGAATTTTGGTCAGTTTTGAGCCGTCAAAGATGTATGGTGATTATACTTATTGTTCAGTATGCAAAGAGAACTGATGATCATCAGTGGATTCTTGAGCACAAGTGTGTAACAAATTTTGAATCTAGGAGGCATTTGGTTACGATGATGTTCCCAGAGGTAAAAGAAGACTATGAGGAATTGCATGAGATGCTTATTGACAGGTCTCAGTTGTTGGCAGAATCATTTGAATACATAGCACGAGCAGAGCCTGAATCTCTGCATGCTGGCCTTTTTATGGAATTCAAAAATGAGGAAGCTACGGGCCCAGGTGTACTGCGGGAGTGGTTTTTCTTGGTATGTCAAGCAATATTTAATCCACAAAATGCTCTTTTTGTGGCATGCCCAAATGACCGGAGGAGATTTTTCCCTAATCCTGCTTCTAAGGTACATCCTCTGCACCTTGAGTATTTCACCTTCTCTGGTCGGGTGATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTATTTTTCTTGCAATTGGCTGGAACCTATATTACATTAGAAGATATACAGGATGCTGATCCTTATTTGTATAGTAGCTGCAAGCAGATATTGGAGATGGATGCTGATTTGATTGATTCAGATGCTTTAGGACTGACCTTTGTTAGAGAGGTGGAGGAATTAGGATACAGGAAAGTGGTTGAACTTTGCCCTGGTGGGAAAAGCCTTGTTGTGAATAGTAAGAACAGGAAGGAGTATGTTGATCTTCTTATACAGGACCGTTTTGTAACATCTATATCTGAGCAGGTGTCACATTTTGCCCAAGGTTTTGCTGATATTCTTTGCAACCCAAGGCTCCAGCAGTTCTTTTTTAAAAGTTTAGATCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAAATATCATTTCTATTGAAGATTGGAAGGCACATACTGAGTATAGCGGCTATAAAGAGACAGATCCTCAGATATCTTGGTTTTGGGAGATTGTTGGAAGAATGTCAGCTGAACAAAGGAAGGTTCTTCTGTTTTTCTGGACATCTCTGAAGTATTTACCTGTCGATGGTTTCCAAGGTTTGGCTTCCCGTCTCTACATTTACAAGTCCCTGGAACCCGATGATCGCCTTCCTTCATCTCACACATGCTTTTTCCGGCTTTGTTTCCCACCATATCCATCTATGTCTGTCATGCAAGATCGTCTTGAAATCATCACCCAAGAACATATTGGTTGCAGCTTTGGTAATTGGTGA 2679 0.4125 MSIIETPTVDYVHQHGGNNNDNHRVSSKRKLDDYGANDEEENYSDFCDLVSVRMRKEEPKAVNSCNSDADGTVSDRVSDARSMLYGCSSRSESTRLWAGLQFFIRLMSEGKTMVVQACPQDTVRSIHERIQTITGIPVFEQRLIYRGKQLQWEQTLFECSIQNDANVQLVGRMRSTEHPQAWQVINDMISLICRLCRGEVEHDALKTIKGLMTDYLNMTPRIDNDSASGYFQIFMSSSAPAVLVMLYMSPYLGNKECADCSIRHFMSSCRTTLSKSLHTQCARVVLEFCKLLKRVGSEDPLYVSCRSTFGSLLETSSVSYGSESGKGLILIQDIFPFVRELANILLRDLDKSMESPTSLGPLLSDVRDFTAFLLPLRTGIRKQLAFKSPLSSKTDEKHHKHLLLVEENEYLRLIFIELLKKMDQCLHKMNEFLVSKERVEGDILYSAWSKYLSILKELYHLSKLYEGAEEEFWSVLSRQRCMVIILIVQYAKRTDDHQWILEHKCVTNFESRRHLVTMMFPEVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFFLVCQAIFNPQNALFVACPNDRRRFFPNPASKVHPLHLEYFTFSGRVIALALMHRVQVGIVFDRVFFLQLAGTYITLEDIQDADPYLYSSCKQILEMDADLIDSDALGLTFVREVEELGYRKVVELCPGGKSLVVNSKNRKEYVDLLIQDRFVTSISEQVSHFAQGFADILCNPRLQQFFFKSLDLEDLDWMLHGSENIISIEDWKAHTEYSGYKETDPQISWFWEIVGRMSAEQRKVLLFFWTSLKYLPVDGFQGLASRLYIYKSLEPDDRLPSSHTCFFRLCFPPYPSMSVMQDRLEIITQEHIGCSFGNW 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3152 892 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 652 734 - -
Glsi11g3152 892 ProSiteProfiles Ubiquitin domain profile. 100 176 IPR000626 GO:0005515
Glsi11g3152 892 PRINTS Ubiquitin signature 111 131 IPR019956 -
Glsi11g3152 892 PRINTS Ubiquitin signature 153 174 IPR019956 -
Glsi11g3152 892 PRINTS Ubiquitin signature 132 152 IPR019956 -
Glsi11g3152 892 MobiDBLite consensus disorder prediction 1 27 - -
Glsi11g3152 892 FunFam E3 ubiquitin-protein ligase UPL5 776 891 - -
Glsi11g3152 892 Gene3D Hect, E3 ligase catalytic domain 652 734 - -
Glsi11g3152 892 Pfam Ubiquitin family 103 174 IPR000626 GO:0005515
Glsi11g3152 892 ProSiteProfiles HECT domain profile. 552 890 IPR000569 GO:0004842
Glsi11g3152 892 Pfam HECT-domain (ubiquitin-transferase) 581 884 IPR000569 GO:0004842
Glsi11g3152 892 CDD HECTc 531 890 IPR000569 GO:0004842
Glsi11g3152 892 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 101 890 - -
Glsi11g3152 892 SUPERFAMILY Hect, E3 ligase catalytic domain 528 878 IPR035983 GO:0004842
Glsi11g3152 892 SMART ubq_7 102 172 IPR000626 GO:0005515
Glsi11g3152 892 SUPERFAMILY Ubiquitin-like 101 188 IPR029071 -
Glsi11g3152 892 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 93 188 - -
Glsi11g3152 892 SMART hect_3 550 890 IPR000569 GO:0004842
Glsi11g3152 892 Gene3D Hect, E3 ligase catalytic domains 532 758 - -
Glsi11g3152 892 Gene3D - 95 188 - -
Glsi11g3152 892 Gene3D Hect, E3 ligase catalytic domain 775 891 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3152 Glsi-ChrGlsi11 30826316 30866798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3152 100 209 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.088 2.71e-10 57.4