Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi11g3149 | ATGGCCTTACAGAACATTGGTGCTTCAAATTGTGATGATGCCTTCTATAGGTACAAGATGCCAAAAATGATAACCAAGATTGAAGGTAGAGGAAATGGCATTAGGACTAATGTTGTTAACATGGTTGACATTGCAAAGGTCCTGGCTAGACCTACAGTTTACATTACAAAGTATTTTGGTTATGAGCTTAGAGCCCAATCAAAATTTGATGGAAGGTCACAAATGGTTTTGTTGCATGCTTTAGAATCTTTTTGTGGGAAAGTAAGCACAGAGGTAGTGAAGGAGGTTGCATTAGTCTTGAAGGAGCTCTATAATTGTAATGTGTTGGTGGAAGAGTATATACTTTAA | 348 | 0.3736 | MALQNIGASNCDDAFYRYKMPKMITKIEGRGNGIRTNVVNMVDIAKVLARPTVYITKYFGYELRAQSKFDGRSQMVLLHALESFCGKVSTEVVKEVALVLKELYNCNVLVEEYIL | 115 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi11g3149 | 115 | ProSiteProfiles | W2 domain profile. | 1 | 115 | IPR003307 | GO:0005515 | |
| Glsi11g3149 | 115 | Pfam | Domain found in IF2B/IF5 | 12 | 79 | IPR002735 | GO:0003743|GO:0006413 | |
| Glsi11g3149 | 115 | SUPERFAMILY | ARM repeat | 69 | 115 | IPR016024 | - | |
| Glsi11g3149 | 115 | SUPERFAMILY | Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 10 | 77 | IPR016189 | GO:0003743|GO:0006413 | |
| Glsi11g3149 | 115 | Gene3D | - | 2 | 96 | - | - | |
| Glsi11g3149 | 115 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR | 3 | 75 | IPR045196 | GO:0003743|GO:0006413 | |
| Glsi11g3149 | 115 | SMART | eIF2Bneu4 | 15 | 109 | IPR002735 | GO:0003743|GO:0006413 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi11g3149 | Glsi-ChrGlsi11 | 30511616 | 30511963 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi11g3149 | 1 | 93 | Eukaryotic Initiation Factors Gene Family | AT1G36730 | 58.929 | 8.15e-38 | 130 |