Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3143 ATGGTATCGATGGAGGATTCTCGCTCCAATCCAAATCGATTCCCTTTATCCCGAAGTTATTACACTACCACTTCTATCAGTTCTTCTTCCTCCAAAGTTCACCGGAACATCGGCAGGTCTATGCGAACCATACGCTCGAATTTTATCCAAGATGATCATAAATTCTCCTCAAAGGCATCCTCAACCACCCAAAAATCGATGTGCCCATCTGAAAACTTGACCGATTCGGTCATCAACCTCAGGCTCGGTGATTTCGCATCGCAGAGCAACAAATCACCCAAGTCCTCCCCAGCGAAGGAGGATTTTCTTGATCTTTCGCAGGCTTTCAGTGATTTCTCAGCTTACAGTAGCGATATTTCCGGTGAGCTGCAGCGGCTGGCGGGTTTGCCGTCATTGGAAAATGCGCAGAAGAACGAGGGTGGTGAACTGGTGGAGCAGGAGACGGAACCGGAGCCGTGTCTTGGGTTTCTGCAGCGGGAAAATTTTTCTACTGAGATTATTGAGAGTATATCTCCAGAGGATCTTCAGCCGACAGTGAAGATCTGTATCGATGGACTACAATCGCCGTCGTCGGCTGTTAAGCGATCAGCTGCGGCCAAGCTCAGGCTATTGGCGAAGAACCGAGCGGATAATCGAGCTCTGATTGGCGAGTCCGGTGCGGTGCCCGCTTTGATTCCCCTTCTTCGCTGCAGTGATCCGTGGACGCAGGAACACGCGGTAACGGCCTTGTTGAATCTCTCACTGCACGAGAACAACAAGATGCTGATAACAAATTCAGGAGCTATAAAGTCACTGGTTTATGTGCTTAAAACGGGGACAGAGACTTCGAAGCAGAACGCGGCGTGTGCGCTGTTAAGCCTTGCGTTGGTGGATGAGAACAAGAGCTCCATTGGGGCTTGTGGGGCTATACCTCCACTCGTTTCCTTGCTATTGAATGGTTCTAACAGGGGAAAGAAGGACGCCCTCACCACACTGTATAAGCTGTGTTCCATCAAGCAGAACAAGGAGAGGGCGGTAAGCGCTGGGGCGGTGAAGCCACTTGTGGAGCTGGTGGCAGAGCAAAGGACAGGTATGATGGAGAAGGCAATGGTGGTACTTAATAACTTGGCTGGGATTCAGGAAGGGAAGGATGCAATTGTGGAAGAAGGTGGAATAGCTGCTCTAGTGGAGGCAATTGAAGATGGATCAGTGAAGGGAAAGGAATTTGCCGTGTTGACACTTCTACAGCTATGTGCTGACGACTTGAGGAATAGAGGATTGCTTGTGAGGGAGGGTGGCATACCTCCCTTGGTTGCACTTTCCCAGACTGGGAGTGTTCGAGCTAAGCACAAGGCTGAAAGGCTTCTTGTATATGTGAGAGAATCAAGGCAAGAAGCATCCTCTTCAAATCCTTAG 1395 0.4989 MVSMEDSRSNPNRFPLSRSYYTTTSISSSSSKVHRNIGRSMRTIRSNFIQDDHKFSSKASSTTQKSMCPSENLTDSVINLRLGDFASQSNKSPKSSPAKEDFLDLSQAFSDFSAYSSDISGELQRLAGLPSLENAQKNEGGELVEQETEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQSPSSAVKRSAAAKLRLLAKNRADNRALIGESGAVPALIPLLRCSDPWTQEHAVTALLNLSLHENNKMLITNSGAIKSLVYVLKTGTETSKQNAACALLSLALVDENKSSIGACGAIPPLVSLLLNGSNRGKKDALTTLYKLCSIKQNKERAVSAGAVKPLVELVAEQRTGMMEKAMVVLNNLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCADDLRNRGLLVREGGIPPLVALSQTGSVRAKHKAERLLVYVRESRQEASSSNP 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3143 464 SMART arm_5 290 330 IPR000225 GO:0005515
Glsi11g3143 464 SMART arm_5 372 412 IPR000225 GO:0005515
Glsi11g3143 464 SMART arm_5 331 371 IPR000225 GO:0005515
Glsi11g3143 464 SMART arm_5 208 248 IPR000225 GO:0005515
Glsi11g3143 464 SMART arm_5 249 289 IPR000225 GO:0005515
Glsi11g3143 464 SMART arm_5 413 454 IPR000225 GO:0005515
Glsi11g3143 464 FunFam U-box domain-containing protein 4 318 459 - -
Glsi11g3143 464 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 342 384 IPR000225 GO:0005515
Glsi11g3143 464 SUPERFAMILY ARM repeat 175 451 IPR016024 -
Glsi11g3143 464 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 301 343 IPR000225 GO:0005515
Glsi11g3143 464 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 219 261 IPR000225 GO:0005515
Glsi11g3143 464 PANTHER U BOX DOMAIN-CONTAINING 118 449 - -
Glsi11g3143 464 FunFam U-box domain-containing protein 4 165 317 - -
Glsi11g3143 464 Pfam Armadillo/beta-catenin-like repeat 210 247 IPR000225 GO:0005515
Glsi11g3143 464 Pfam Armadillo/beta-catenin-like repeat 291 330 IPR000225 GO:0005515
Glsi11g3143 464 Gene3D - 163 460 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3143 Glsi-ChrGlsi11 30210222 30212391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3143 115 457 U-box Gene Family AT2G23140 43.875 1.14e-81 263