Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3140 ATGGAAATGGACCCTTGCAAACTTTTCATTGGTGGGATTTCCTGGGAGACAAATGAAGACGGACTCAGACAGTATTTCCAGAATTATGGAGATGTACTGGAAGCTGTGATAATGAAGGATCGGACCACAGGGCGTGCCCGTGGCTTTGGATTTATTGTTTTTTCTGATCCTTCTGCTGCTGAACGAGTTGTTATGGAAAAGCATGTCATAGATGGTAGAACTGTTGAAGCAAAAAATGCTGTCCCTAGAGATGATCAGAGCATTCTGAACAGAAGCAACAGCAGCACTCATGGGTCGCCTGGTCCTAGCCACACAAAGAAGATATTTGTAGGAGGTCTAGCATCCACAGTTACTGAGAATGACTTTAAGAAGTACTTTGATCAATTTGGAACTATTACAGACGTTGTTGTGATGTATGACCATAACACTCAAAGGCCAAGAGGTTTTGGATTCATCACCTATGATTCTGAGGAAGCAGTGGAGAAAGTTCTGTACAGAAGTTTCCATGAACTGAATGGGAAAATGGTCGAGGTTAAGCGCGCTGTTCCAAAGGAATTATCTTCAGGTCCAAGTAGAGGTCAATTAGCTGGACATAACTACAGTCTAAGTAGAATTACTAGCCTTGCTAATGGTTACATTCAGGGCTATAATCCAAGCATGGTTGAAGGTCATGGACTTAGAACAGATGGCAGATTTAGTCCTGTTAACGTTGGTAGGAGTGGATATACTCCATTAAGTCCTAGTTATGGGGCGGGACTCAATTTTGAGCCAGATTGGAGTCAAAATGGAAGTACAAACTTTACTTCTACCCTAGTCTTAGGACAGGCTTTAAACTCTTCCTACAACGGAAGTCCAAGCAGATACAATAATGCCGTAGGGTATGCTGGTAAAAGTGGAGCCAACAGTTCAACCTTAAGTTTAACAAATAAGAATTGGGGGAACGTTAGTCTTAACTATGCTAATAACCCTACAAGCTCTGATGCTTTTGAGGAATACAGAAGTGAAAATCCGAGCATGGATTCTTTTGGTAGTATTGGAGCATTTTGGAGTCCCTCCCCTAGTACCATTCAAGCTGGAACTGTTGGCTCTGGCTACGGCAAGGGCAGTCTTAGTTATGGCTCTAGAGATGTGATTTTTGGTTCAAAAGCTGTAGGTTATAGAAAAAGTAGTGAAACCCTTGTTGCATCAGCGTCATCATATGATCTATCAAATAGCAGTTATGATGGAGCATATAAAGATATTTATGGAGCCGAGTCATTTTATGGAGACTCCAGTTGGAAATCATCAGCTTTAGAACTAGAGGATTCTGGTTCTCTTGGTTATAGCCTCGGAGATGCTGTTTCAGATTTAATGAGCAAAAGTTCTGGTCGCTACATTAGGCCTTATGGGCAATCAAATAGAGAGACTACTAACAGTGTCTATGAGGTGATAATTAGCCATGTCAACATTATAGCTGGGGATGTAGTTCCATTGTTTGCCACAGCATGTGCTTCAGATGACAATCTATAA 1509 0.4155 MEMDPCKLFIGGISWETNEDGLRQYFQNYGDVLEAVIMKDRTTGRARGFGFIVFSDPSAAERVVMEKHVIDGRTVEAKNAVPRDDQSILNRSNSSTHGSPGPSHTKKIFVGGLASTVTENDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLYRSFHELNGKMVEVKRAVPKELSSGPSRGQLAGHNYSLSRITSLANGYIQGYNPSMVEGHGLRTDGRFSPVNVGRSGYTPLSPSYGAGLNFEPDWSQNGSTNFTSTLVLGQALNSSYNGSPSRYNNAVGYAGKSGANSSTLSLTNKNWGNVSLNYANNPTSSDAFEEYRSENPSMDSFGSIGAFWSPSPSTIQAGTVGSGYGKGSLSYGSRDVIFGSKAVGYRKSSETLVASASSYDLSNSSYDGAYKDIYGAESFYGDSSWKSSALELEDSGSLGYSLGDAVSDLMSKSSGRYIRPYGQSNRETTNSVYEVIISHVNIIAGDVVPLFATACASDDNL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3140 502 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Glsi11g3140 502 Gene3D - 103 192 IPR012677 -
Glsi11g3140 502 Gene3D - 4 88 IPR012677 -
Glsi11g3140 502 SUPERFAMILY RNA-binding domain, RBD 3 101 IPR035979 GO:0003676
Glsi11g3140 502 SMART rrm1_1 107 179 IPR000504 GO:0003723
Glsi11g3140 502 SMART rrm1_1 7 78 IPR000504 GO:0003723
Glsi11g3140 502 CDD RRM2_Hrp1p 107 184 - -
Glsi11g3140 502 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Glsi11g3140 502 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Glsi11g3140 502 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Glsi11g3140 502 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Glsi11g3140 502 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Glsi11g3140 502 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Glsi11g3140 502 MobiDBLite consensus disorder prediction 81 105 - -
Glsi11g3140 502 SUPERFAMILY RNA-binding domain, RBD 104 236 IPR035979 GO:0003676
Glsi11g3140 502 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 3 467 - -
Glsi11g3140 502 MobiDBLite consensus disorder prediction 85 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3140 Glsi-ChrGlsi11 30083069 30086359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3140 6 180 Eukaryotic Initiation Factors Gene Family AT2G23350 22.034 9.18e-09 56.2