Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3113 ATGGATCTCACACCTAGAGAGAGAAGCAAGAGTGGTCGTTTACTTTTACAAAATCCTCAACACATGCATCTTTTTTGGGGATTTCCGGATTTGAAGATGAGGATAGACTTGAATTTTTCCAGCGGAGGTGTTCGTGAGTCTGTTCAACTCAAGAAATCAATGGGTCGTTCTCGTGGGAATTTTCACGCGGATGAGGACCCCAACCAAAGATCCAGGAGAAAAAAGAATGCTGCCAGTGGAGAAATTTCGGAACCTGGAGCTGCAGGTCAAGGAACAAGTGAAGGGAAGAAGGCTTTGTACCATTGCAATTATTGTAACAAAGATATTACAGGAAAAATCCGTATTAAATGTGCCATGTGCCCTGATTTTGACCTATGTATAGAGTGTTTTTCTGTTGGAGCTGAGGTGACACCACATAAAAGCCATCACCCATACAGGGTTATGGATAATTTATCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATTTTGCTTCTTGAGGGAATTGAAATGTATGGCTTGGGGAACTGGGCAGAAGTTGCTGAGCATGTTGGGACAAAAAACAAAGAAGCATGCATAGAACACTATAGGAATGTATACTTGAACTCCCCGTTCTTTCCTCTTCCGGACATGTCTCATGTTGTTGGAAAAAACAGAAAGGAGCTTCTTGCTATGGCCAAAGGGCAGGGTGAAGACAAGAAAGGGATTTCTGTTGGGGATTTTAATTTAAAAGAAGAATCGCCATTTTCTCCATCTAGAGTCAAGGTTGAAGATTCCCATAAAGCTGGTCCCTCTAGCCGTTTACTATCCAGTTTAAATTCAGAAGTAGAATCTGGCCCCTCTAGTGGCACACATACTGCTGCACCTTCTAACCAGAAGGCATCCAATGCAACCTGGGGCAAAGATGGTCCTGGAGTAATTAAAATGGAAGATGAGAAGACTTTTGCAGGAAAAAAGCCAAGTTCGTCAGGCAGTGAAGGTCCTTCTTTAGTGCAGTTGAGTGGCTATAACCCAAAAAGACAGGAGTTTGATCCTGAATACGATAATGACGCTGAACAACTACTTGCTGAGATGGAATTTAAGGACACCGACACTGAGGAAGAACGAGAGCTGAAACTTCGTGTGTTGCGAATCTATTCCAAAAGGCTTGATGAAAGAAAGCGGAGGAAAGATTTTATTCTTGAAAGAAATTTGTTATATCCAAATCCTTTCGAGAAGAATTTAACACCTGAAGAGAGGGCAATATGTCGGAAATATGACATGTTCATGCGCTTTCATACCAAGGAAGATCACGAGGAATTGCTTAGAACAGTTATATCTGAACACAGAACTCTTAAAAGAATTCAAGAGCTCAAGGAAGCCCAAGCTGCTGGTTGCCGCTCATCAACTGAAGCAGATAAGTATCTGGAAAAGAAGCAAAGAAGGGAAGCTGAAGAAAGTGCACGTAGAGCAAAAGAAAGTCCTCAGGTTGGCCCAAGCAATCAGGGGATTCCAAATGCTTTCATGTCTTCAGACTCTGCTGGCAAGGATTCTAGTGCAAGACCTGCAGGACCTGCTGCTTCAAGCTCTGTCAATGAAATGGATGTAACAGGATACTATGGGGCTGATTTACTTTCTGCAAGTGAGAAACGTTTATGCTGCGAGCTAAGGTTACCTCCAGCCATATATCTGCAGATGCAACAGGTTTTGTCTGTACAATTACTCAGTGGCAATATCACTTCAAAATCGGGTGCCCACCACTTATTTAGGATGGAAACAAGCAAAATTGACAGGGTTTATGATATGCTAGTAAAAAAGGGACTCGCTCCACCTTGA 1824 0.4249 MDLTPRERSKSGRLLLQNPQHMHLFWGFPDLKMRIDLNFSSGGVRESVQLKKSMGRSRGNFHADEDPNQRSRRKKNAASGEISEPGAAGQGTSEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSHHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEVAEHVGTKNKEACIEHYRNVYLNSPFFPLPDMSHVVGKNRKELLAMAKGQGEDKKGISVGDFNLKEESPFSPSRVKVEDSHKAGPSSRLLSSLNSEVESGPSSGTHTAAPSNQKASNATWGKDGPGVIKMEDEKTFAGKKPSSSGSEGPSLVQLSGYNPKRQEFDPEYDNDAEQLLAEMEFKDTDTEEERELKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKNLTPEERAICRKYDMFMRFHTKEDHEELLRTVISEHRTLKRIQELKEAQAAGCRSSTEADKYLEKKQRREAEESARRAKESPQVGPSNQGIPNAFMSSDSAGKDSSARPAGPAASSSVNEMDVTGYYGADLLSASEKRLCCELRLPPAIYLQMQQVLSVQLLSGNITSKSGAHHLFRMETSKIDRVYDMLVKKGLAPP 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3113 607 MobiDBLite consensus disorder prediction 229 343 - -
Glsi11g3113 607 Gene3D - 91 148 IPR043145 -
Glsi11g3113 607 MobiDBLite consensus disorder prediction 267 301 - -
Glsi11g3113 607 ProSiteProfiles SANT domain profile. 155 207 IPR017884 -
Glsi11g3113 607 SMART zz_5 96 141 IPR000433 GO:0008270
Glsi11g3113 607 MobiDBLite consensus disorder prediction 465 527 - -
Glsi11g3113 607 Pfam Myb-like DNA-binding domain 159 202 IPR001005 -
Glsi11g3113 607 CDD ZZ_ADA2 100 148 IPR041983 -
Glsi11g3113 607 ProSiteProfiles SWIRM domain profile. 521 607 IPR007526 GO:0005515
Glsi11g3113 607 FunFam Transcriptional adapter 2 153 205 - -
Glsi11g3113 607 SMART sant 156 205 IPR001005 -
Glsi11g3113 607 Pfam Zinc finger, ZZ type 98 140 IPR000433 GO:0008270
Glsi11g3113 607 SUPERFAMILY Homeodomain-like 514 604 IPR009057 -
Glsi11g3113 607 PIRSF Txn_adaptor_ADA2 87 606 IPR016827 GO:0003713|GO:0006357|GO:0035065
Glsi11g3113 607 MobiDBLite consensus disorder prediction 321 339 - -
Glsi11g3113 607 MobiDBLite consensus disorder prediction 57 79 - -
Glsi11g3113 607 CDD SANT 160 202 IPR001005 -
Glsi11g3113 607 MobiDBLite consensus disorder prediction 467 488 - -
Glsi11g3113 607 FunFam Transcriptional adapter 93 148 - -
Glsi11g3113 607 Gene3D - 154 205 - -
Glsi11g3113 607 MobiDBLite consensus disorder prediction 490 527 - -
Glsi11g3113 607 MobiDBLite consensus disorder prediction 50 94 - -
Glsi11g3113 607 FunFam Transcriptional adapter 2 522 606 - -
Glsi11g3113 607 MobiDBLite consensus disorder prediction 229 243 - -
Glsi11g3113 607 ProSiteProfiles Zinc finger ZZ-type profile. 97 153 IPR000433 GO:0008270
Glsi11g3113 607 SUPERFAMILY Homeodomain-like 153 206 IPR009057 -
Glsi11g3113 607 ProSiteProfiles Myb-like domain profile. 160 203 IPR001005 -
Glsi11g3113 607 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 100 603 - -
Glsi11g3113 607 SUPERFAMILY RING/U-box 100 162 - -
Glsi11g3113 607 ProSitePatterns Zinc finger ZZ-type signature. 102 129 IPR000433 GO:0008270
Glsi11g3113 607 Gene3D - 522 605 IPR036388 -
Glsi11g3113 607 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 207 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3113 Glsi-ChrGlsi11 29046595 29056953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3113 54 605 EF-hand Containing Proteins AT3G07740 46.194 1.51e-157 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi11g3113 Myb_DNA-binding 3.2e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g3113 11 29046595 29056953 Glsi11g3113 11 29046595 29056953 ECH