Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3094 ATGGCTGAATCAGATAACGAGTCAGGAGGTCAAACGGGGAACACACGCACAAACGATGAATTGTCAGGGTACTGCAGAGAGCAGGACAGGTATCTTCCCATAGCCAACGTGAGCAGAATCATGAAGAAGGCCCTGCCAGCCAACGCCAAGATCTCCAAAGAAGCAAAAGAGACTGTGCAAGAGTGCGTATCAGAGTTCATCAGCTTCGTCACCGGGGAAGCCTCTGAGAAGTGCCAGAAGGAGAAGAGGAAGACAATTAACGGCGATGATCTGCTGTGGGCCATGACCACACTGGGTTTCGAAGAGTATGTGGAGCCATTGAAGGTTTATCTTCACAAGTATAGGGAGATGGAGGGGGAGAAGACTGCTATGATTGGGAGATCACAGGAAGGTGATCTGAGGGATGGGAATGGTGGTGGTGGGGTTTATGGCCATGGCCATGTTGGTGGGGTTCCATCCAGTGTGATGATGATGATGGGGCATCATCAAGGGCACTTCTATGGATCTGGAGGTGGATCAACATAA 525 0.5048 MAESDNESGGQTGNTRTNDELSGYCREQDRYLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFVTGEASEKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKVYLHKYREMEGEKTAMIGRSQEGDLRDGNGGGGVYGHGHVGGVPSSVMMMMGHHQGHFYGSGGGST 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3094 174 MobiDBLite consensus disorder prediction 1 21 - -
Glsi11g3094 174 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Glsi11g3094 174 MobiDBLite consensus disorder prediction 1 22 - -
Glsi11g3094 174 FunFam Nuclear transcription factor Y subunit B-3 20 139 - -
Glsi11g3094 174 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Glsi11g3094 174 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Glsi11g3094 174 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Glsi11g3094 174 Gene3D Histone, subunit A 22 136 IPR009072 GO:0046982
Glsi11g3094 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 128 IPR027113 GO:0001228|GO:0006355|GO:0016602
Glsi11g3094 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Glsi11g3094 174 SUPERFAMILY Histone-fold 28 133 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3094 Glsi-ChrGlsi11 28279923 28280447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3094 1 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 79.070 1.19e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Glsi11g3094 CBFD_NFYB_HMF 9.3e-28 CL0012