LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g3077	ATGAAAATAAGTGCTACACATAAGTATTTTCGGCAGCTAATCAATGCAGTTGATTTCTGTCATAGCAAAGGTGTGTACCACCAAGATATAAAGCCAGAGAACCTTTTGTTGGATGAAAATAGGAATCTTAAGGTGTCTGATTTTGGGTTAAGTGCTCTGGCTGAATCCAAGAGGCAGGATGGCTTACTGCATACTACTTGTGGCACACCTGCCTATGTTGCTCCTGAAGTCATCAAAAGAAAAGGGTATGATGGTGCCAAAGCTGATGTTTGGTCTTGTGGAGTAGTCCTGTTTGTTTTATTCGCAGAAGCACGCAGACTAGTATGCAAGATATTGGAACCAGATCCTGATACTAGAATTTCCATAGCTATGATTAAGGAATGTTCTTGGTTCAAGACAGGACCAAATTCTAGGCATAAAAAACCTAAAGTGGAAAAAAAGACTGTCTCGTTGTCAGGCAACAACCCTTCTGATCAAAGCAATGAAACTGATAGTGACAGTATAGCTGCAGAAGCAAGGGAAGAGTCATTTGTGCCCACCAGTATAAATGCATTTGATATTATCTCCCTTTCGGCTGGTTTTAATCTTTCTAGATTCTTCAGTGACAGTTTTTAG	615	0.4	MKISATHKYFRQLINAVDFCHSKGVYHQDIKPENLLLDENRNLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVIKRKGYDGAKADVWSCGVVLFVLFAEARRLVCKILEPDPDTRISIAMIKECSWFKTGPNSRHKKPKVEKKTVSLSGNNPSDQSNETDSDSIAAEAREESFVPTSINAFDIISLSAGFNLSRFFSDSF	204

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g3077	204	Gene3D	Kinase associated domain 1, KA1	182	203	-	-
	Glsi11g3077	204	SMART	serkin_6	1	131	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g3077	204	Pfam	Protein kinase domain	5	102	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g3077	204	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	5	200	-	-
	Glsi11g3077	204	ProSiteProfiles	NAF domain profile.	177	201	IPR018451	GO:0007165
	Glsi11g3077	204	MobiDBLite	consensus disorder prediction	148	166	-	-
	Glsi11g3077	204	MobiDBLite	consensus disorder prediction	134	168	-	-
	Glsi11g3077	204	Pfam	NAF domain	179	202	IPR004041	GO:0007165
	Glsi11g3077	204	ProSiteProfiles	Protein kinase domain profile.	1	204	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g3077	204	Gene3D	Transferase(Phosphotransferase) domain 1	1	181	-	-
	Glsi11g3077	204	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	25	37	IPR008271	GO:0004672\|GO:0006468
	Glsi11g3077	204	SUPERFAMILY	Protein kinase-like (PK-like)	5	172	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g3077	Glsi-ChrGlsi11	27733656	27734360	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g3077	8	202	CBL-interacting serine-threonine protein kinases	AT5G58380	54.043	2.83e-80	245

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Glsi11g3077		Pkinase	6.2e-34	CL0016