Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3063 ATGCCCGCTCTCACTACAGTTTCTCTCTCATCAAATCCTCGGCAACCCAGGGTCCGTAGATACTTCGTTCGTTCGTTCTGGCTTGGCATAGCAGCTATGGAACGTGGAGGCTTTCATGGCTACCGCAAGCTCCCCAATACTACCTCTCCAGGTAAAATCTATAATACCAACAATACAAAATTTGCTTCTCTCTTCTGCATTGATCACTTTTTGTCTCTTCCAGCATCACCTTTGCCACTTTTGTCTCCCTGGTTTAGAACAGTAAAGGGAAACGGATATGTGTTGAAGCTATCAGTATCAGAGGCGAACACAAGGCAGCAACTCGCAGAGAACAGCCACTCAGGAGCAGCAGAGGACAGCGAGTGCACTGTGAGGGAGCAAGACAGGTTCATGCCAATTGCCAATGTGATTAGGATCATGCGCAAGATCCTACCCCCACATGCCAAGATCTCCGATGATGCCAAGGAAACAATCCAAGAGTGTGTCTCAGAATACATCAGTTTCATCACAGGGGAGGCCAATGAGCGTTGCCAGAGGGAGCAGCGCAAGACCATCACAGCAGAGGACGTGCTCTGGGCCATGAGCAAGCTCGGGTTCGATGACTACATCGAGCCACTCACCATGTACCTTCACCGGTACCGTGAGATGGAGGGCGATCGTGCCTCCATGAGAGGAGAGCCACTGGGGAAGAGGACAGTGGAATATGGGGCATTAGGGGTTGCTACTGCTGCTTTTATTCCTCCATTTCACATTGGTCAGCATCCTAATGGGTATTTTGGTGCAGCCATGGGAGGGTTCATGAGGGATGCACAGAATGCTGGGTCATCCCAGGGTTCACTCTCAAATACTGAACCAAATGGTCCATATAAATGA 873 0.4994 MPALTTVSLSSNPRQPRVRRYFVRSFWLGIAAMERGGFHGYRKLPNTTSPGKIYNTNNTKFASLFCIDHFLSLPASPLPLLSPWFRTVKGNGYVLKLSVSEANTRQQLAENSHSGAAEDSECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYREMEGDRASMRGEPLGKRTVEYGALGVATAAFIPPFHIGQHPNGYFGAAMGGFMRDAQNAGSSQGSLSNTEPNGPYK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3063 290 Gene3D Histone, subunit A 116 234 IPR009072 GO:0046982
Glsi11g3063 290 MobiDBLite consensus disorder prediction 270 290 - -
Glsi11g3063 290 FunFam Nuclear transcription factor Y subunit B-6 119 235 - -
Glsi11g3063 290 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 108 256 IPR027113 GO:0001228|GO:0006355|GO:0016602
Glsi11g3063 290 SUPERFAMILY Histone-fold 127 225 IPR009072 GO:0046982
Glsi11g3063 290 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 130 194 IPR003958 -
Glsi11g3063 290 PRINTS CCAAT-binding transcription factor subunit A signature 177 195 - -
Glsi11g3063 290 PRINTS CCAAT-binding transcription factor subunit A signature 158 176 - -
Glsi11g3063 290 PRINTS CCAAT-binding transcription factor subunit A signature 196 214 - -
Glsi11g3063 290 ProSitePatterns NF-YB/HAP3 subunit signature. 161 177 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3063 Glsi-ChrGlsi11 26719231 26721537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3063 33 258 CCAAT-HAP3 Transcription Factor Family AT5G47670 55.042 7.97e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Glsi11g3063 CBFD_NFYB_HMF 1e-25 CL0012