Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3054 ATGCTACGTCATGGGTTTGGTCAATCTGATATCAATTGGAACAATTTATCATCTCTGATGGACTCAAAAACAAGTGCTAGAGTTCCCTCCAAACAGCATCAGAAGACGGCTGGGGTACAAACAGTAGAGGCAAAAGACATCAGGCCTTCTCCACTGGTAGTTCCAAAGATAGTCAAACATGAACTGGCTGCTCCTGAAAGTTTATCGAAATCTGTACAAAACACATCAAAGCAGAATACTGGAGAAACTTCTGAAAACAAGAAGTCGGGAATGTCAAACCAAAAAGGGCCTGCTGATTCCTTGATTAATAAATGTGTTTCTGGTGCTTCCTCATCTGTCCTGGAGAAAGCATCTGGAGAAGTTGACCATGCTATTAATGAAAACAGAGGCTCCCAGGATAGCTCTATTGATCTAGAAAAGAAGACATCAGAGTATGGAAGTGTGAAGAACAGTTCTGTTTCAGCTAAAGTTAGTGATGGGGCAAGCAGTTTTGGAAAAACCAGTGGAAGTGCCAAGATCAGTGATCGAGCTGATTATGTTGAGAGTGGTAAGAGTAGTATCTGCAGAGGAAGCACAAGCAGTGATGTCAGTGATGAGAGCACCTGTAGCAGCTTTAGTAGCAGTATAAGCAAACCTCACAAAGCAAATGACTTGAGATGGGAAGCCATCCAAGCTGTCCGAGCTAAAGATGGGGCCTTGGGTTTAGGTCACTTTAGACTACTAAAGAGGTTGGGTTGTGGGGATATAGGGAGTGTGTACCTCTCTGAGTTGAGTGGAACTAAATGCTATTTTGCAATGAAGGTAATGGATAAAGGGTCCCTAGCAAGTCGTAAGAAGCTGCTTCGTGCTCAGACTGAAAGGGAAATACTGCAGTCACTGGATCATCCCTTTCTCCCAACATTGTATACCCATTTTGAGACAGAGAAGTTCTCATGCTTGGTAATGGAATTCTGCCCTGGTGGCGACTTGCACACACTTAGGCAAAAACAGCCAGGGAAGCATTTTCCTGAGCAGGCAGTAAAATTTTATGTGGCCGAAGTCCTACTGGCTTTGGAATACCTCCACATGCTTGGAATTGTCTACCGTGACCTAAAGCCAGAAAATGTTCTTGTGAGGGATGACGGACACATTATGCTCTCTGACTTTGATCTGTCTCTCCGTTGTACTGTTAGTCCAACTCTTGTTAAAACCTCATCAATGGAATCTGAGCCTTTAAGAAAGAATCCTGTTTATTGCGCCCAGCCAGCTTGTATTGAGCCACCTTCCTGCATCCAGCCATCTTGTGTTGCTCCCACAACATGCTTTTCACCCCGGCTCTTTTCTAGCAAATCAAAGAAGGATCGGAAACCCAAGACTGAAATTGGAAACCAAGTGAGTCCATTACCTGAGCTCATTGCAGAGCCTACTGATGCTCGCTCTATGTCATTTGTTGGGACCCACGAGTACTTAGCACCTGAGATTATCAAGGGCGAAGGTCATGGGAGTGCCGTTGATTGGTGGACTTTTGGAATTTTTCTATACGAGCTGTTGTTCGGTAAAACTCCTTTTAAAGGATCTGGGAACCGAGCTACATTGTTTAATGTTGTCGGCCAGCCTCTACGTTTTCCAGAATCACCTGTTGTGAGTTTTGCAGCAAGGGATCTTATAAGGGGGTTGCTTGTAAAGGAACCACAGCACAGATTGGCATATAAACGAGGGGCTACTGAGATTAAGCAACATCCCTTTTTTGAAGGTGTGAATTGGGCATTGATCCGATGTGCTACCCCTCCTGAGATCCCGAAGCCTGTAGAGTATGAGAAGATACCTTCCCCAGTCTCTTCAGGCAGTGAAAAGGTTGTTCACCATATGTCAATTCCTGATCAGAAAGGTTCAGACAATTATCTTGAGTTTGATTTCTTCTAG 1902 0.4427 MLRHGFGQSDINWNNLSSLMDSKTSARVPSKQHQKTAGVQTVEAKDIRPSPLVVPKIVKHELAAPESLSKSVQNTSKQNTGETSENKKSGMSNQKGPADSLINKCVSGASSSVLEKASGEVDHAINENRGSQDSSIDLEKKTSEYGSVKNSSVSAKVSDGASSFGKTSGSAKISDRADYVESGKSSICRGSTSSDVSDESTCSSFSSSISKPHKANDLRWEAIQAVRAKDGALGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCTVSPTLVKTSSMESEPLRKNPVYCAQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKDRKPKTEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPVEYEKIPSPVSSGSEKVVHHMSIPDQKGSDNYLEFDFF 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3054 633 Gene3D Transferase(Phosphotransferase) domain 1 471 594 - -
Glsi11g3054 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 359 371 IPR008271 GO:0004672|GO:0006468
Glsi11g3054 633 SMART serkin_6 238 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g3054 633 MobiDBLite consensus disorder prediction 120 144 - -
Glsi11g3054 633 Pfam Protein kinase domain 473 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g3054 633 Pfam Protein kinase domain 239 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g3054 633 MobiDBLite consensus disorder prediction 67 103 - -
Glsi11g3054 633 PANTHER FLIPPASE KINASE 1-RELATED 60 599 - -
Glsi11g3054 633 CDD STKc_phototropin_like 237 595 - -
Glsi11g3054 633 SUPERFAMILY Protein kinase-like (PK-like) 215 608 IPR011009 -
Glsi11g3054 633 MobiDBLite consensus disorder prediction 65 103 - -
Glsi11g3054 633 FunFam serine/threonine-protein kinase D6PK-like 322 389 - -
Glsi11g3054 633 Gene3D Transferase(Phosphotransferase) domain 1 322 397 - -
Glsi11g3054 633 ProSiteProfiles Protein kinase domain profile. 238 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g3054 633 FunFam Serine/threonine-protein kinase AGC1-7 469 594 - -
Glsi11g3054 633 FunFam Serine/threonine-protein kinase D6PK-like 236 321 - -
Glsi11g3054 633 Gene3D Phosphorylase Kinase; domain 1 236 321 - -
Glsi11g3054 633 MobiDBLite consensus disorder prediction 120 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3054 Glsi-ChrGlsi11 26413272 26416517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3054 59 633 AGC Kinase Gene Family AT5G47750 77.123 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Glsi11g3054 Pkinase 1.5e-36 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g3054 11 26413272 26416517 Glsi11g3054 11 26413272 26416517 ECH