Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3032 ATGGTGACAGTGACGGTATGGCAGCGGGAGGGGTATGGAAAATCTGGAAAAATAATCCAGAAAGGGTCAAGATCTCAGAAAAGCGTGCCAGCTCCAGTTTTAGTGGAAAAATGGGCAACTTGGATCTGCTCTGTTCCCCTTCTTTTTCGTCAAGTTAATCGATTATTGGGTTTTTTTTCGGAGGAAGTTGAGTGGTGGGTTTTCAATTTCCACCATAGAAACAGCAGAAGCAGAAGAAGAAGAACAAGAACAAGGATGTTTCCGAGACTGATACACCCCCACGAAGGGATAGTTGGCCAGGAAGATATGCAGGGTGGTTCGAACCACAACCACAAGGGAGACCCATGTCTGGTGTTGACCGCGGATCCCAAACCTCGTCTCCGTTGGACGCAGGACCTCCATGAACGATTTGTCGATGCTGTTACCCAGCTTGGGGGCGCCAGCAAAGCTACACCAAAAGCAATCATGCGGACCATGAATGTCAAGGGCTTGACTCTCTTTCATTTGAAGAGTCATCTTCAGAAATACAGACTCGGTAAGCAATCAGGGAAAGATATGGGTGAGGGATGCAAAGATGGATTGTCAGGTTCGTATCTTTTAGAAAGCCCTGGTACTGATAACTCTCCTCCAAAGTTGCCCACCTCTGATACAAATGAGGGTCGTGAAATCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAACTACATTTGCAAGTGGAGGCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAGCGGAGATATATGGCCATGCTTGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATCGGTGCTACAGTTATAGACTCAGACAGCCAAAAGTTTCAAGGACTTGGAAGTAAAGCACCAAGAGGTCCCTTGCTTGATCCTCTTGGCTTTTACTCCTTACCTTCTGCTGATGTTACCGGAGTACATGCTACGGAAGAACTACCGCCAAGTCTCCAACCCCAAAGGGCTGACTGCTCCACAGAAAGTTGCCTGACATCTCATGAGAGTTCTGGAGGGTTTACACTAGAAGGATCTCCTGGCGAGGCAAAAAAGAGGATGCTGAACTTGGACCCCATGGTGGCAGCAGCAGCGCCTTTGATCTGGAGTGAAGCCAAGATGAGAACTCAAGGCATCAATGTGGCCCAAGGTAACCTGCATGGAATAACTAGGTATGGCATGTAG 1200 0.4767 MVTVTVWQREGYGKSGKIIQKGSRSQKSVPAPVLVEKWATWICSVPLLFRQVNRLLGFFSEEVEWWVFNFHHRNSRSRRRRTRTRMFPRLIHPHEGIVGQEDMQGGSNHNHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEGCKDGLSGSYLLESPGTDNSPPKLPTSDTNEGREIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDSDSQKFQGLGSKAPRGPLLDPLGFYSLPSADVTGVHATEELPPSLQPQRADCSTESCLTSHESSGGFTLEGSPGEAKKRMLNLDPMVAAAAPLIWSEAKMRTQGINVAQGNLHGITRYGM 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3032 399 Gene3D - 123 181 - -
Glsi11g3032 399 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 97 347 IPR044848 GO:0003700
Glsi11g3032 399 FunFam Myb family transcription factor 123 181 - -
Glsi11g3032 399 SUPERFAMILY Homeodomain-like 124 180 IPR009057 -
Glsi11g3032 399 MobiDBLite consensus disorder prediction 192 218 - -
Glsi11g3032 399 Pfam Myb-like DNA-binding domain 127 177 IPR001005 -
Glsi11g3032 399 MobiDBLite consensus disorder prediction 200 215 - -
Glsi11g3032 399 NCBIfam myb-like DNA-binding domain, SHAQKYF class 124 179 IPR006447 GO:0003677
Glsi11g3032 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 181 IPR017930 -
Glsi11g3032 399 Pfam MYB-CC type transfactor, LHEQLE motif 222 267 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3032 Glsi-ChrGlsi11 25578522 25585817 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3032 110 339 G2-like Transcription Factor Family AT3G24120 44.444 2.39e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi11g3032 Myb_DNA-binding 7.6e-06 CL0123