Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3030 ATGGATCCTGCCAGTGGGGGGAACAGTCTCACCAATAATCCTAACCTCACCTCAAAGCAACGGTTACGCTGGACACATGACCTCCATGAACGTTTTGTTGATGCTGTGGCACAACTTGGTGGACCAGATCGTGCCACGCCTAAAGGTGTCCTCAGAGTGATGGGTGTACAAGGCTTAACAATATATCATGTCAAAAGCCATCTGCAGAAATATCGACTAGCAAAATACCTTCCTGACTGCTCATCCGATGGGAAAAAAGCCGACAAGAAAGAAACTGGGGATATGCTTTCCATTACAGATGGTTCATCAGGGATGCAAATTAATGAAGCTCTAAAGCTTCAAATGGAGGTGCAGAAGCGACTACATGAGCAATTAGAGGTTCAGAGACAGCTACAACAAAGGATTGAGGCCCAGGGCAAATACTTGAAGAAGATAATTGAAGAGCAACATCGGCTCAGTGGGGTTCTTTCGGAAGAACCTGGTTCTGGGGTTGCAGCCTCAGTGCTGAGAGAAATGTGCCAAGAACCTGACAATAAAACTGACCCTGCTACCCCTGCCCCCACATCTGAGTGCCCCCTTCAGGAAAAAGCTGCTAAAGAACGTGCCCCAGCAAAGAGTCTTTCCATTGAAGAATCTTTTTCATCTCACCATGAACCATTGACACCGGATTCCAACTGCCATGGTGGCTCCCCTACTGACAGCCCTAAAGAGGAGAGATTGACAAAGAAGCAACGGGTGAGCATGGAGGGAGCATATTCTAAACAAGAAATGGTGCTTCCACATCAGATACTGGAGTCGAGCATGCCATCATGCCAGCAATTAAACACTGTTTTCCTTACCCAGGAGCAGTTTGATCCTCCATTAAATATATCTACTAGAAGTAAAGAGGAATTGGAGAAGGTTGATGGTGGCAATCTGTAA 921 0.4636 MDPASGGNSLTNNPNLTSKQRLRWTHDLHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDCSSDGKKADKKETGDMLSITDGSSGMQINEALKLQMEVQKRLHEQLEVQRQLQQRIEAQGKYLKKIIEEQHRLSGVLSEEPGSGVAASVLREMCQEPDNKTDPATPAPTSECPLQEKAAKERAPAKSLSIEESFSSHHEPLTPDSNCHGGSPTDSPKEERLTKKQRVSMEGAYSKQEMVLPHQILESSMPSCQQLNTVFLTQEQFDPPLNISTRSKEELEKVDGGNL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3030 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 76 IPR017930 -
Glsi11g3030 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 297 IPR044848 GO:0003700
Glsi11g3030 306 MobiDBLite consensus disorder prediction 1 20 - -
Glsi11g3030 306 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Glsi11g3030 306 Gene3D - 18 77 - -
Glsi11g3030 306 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Glsi11g3030 306 MobiDBLite consensus disorder prediction 208 231 - -
Glsi11g3030 306 FunFam Myb family transcription factor 18 76 - -
Glsi11g3030 306 Coils Coil 108 128 - -
Glsi11g3030 306 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
Glsi11g3030 306 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 74 IPR006447 GO:0003677
Glsi11g3030 306 MobiDBLite consensus disorder prediction 175 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3030 Glsi-ChrGlsi11 25561460 25565706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3030 54 306 G2-like Transcription Factor Family AT2G01060 62.500 1.06e-96 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi11g3030 Myb_DNA-binding 7.2e-08 CL0123