Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi11g3019 | ATGGGCGTGGAGGATGAAATTTCTCCGGCCGATCCTCGTGGGGCTCCCGGCAAGGACCAGCAAGCTGCCGGAGTGGGAATTCTTCTTCAGATCATGATGTTGGTTTTGTCCTTCGTCCTGGGTCACGTCCTTCGTCGCAAAAGGATATATGTTATTCCTGAAGCCAGTGCTTCTCTTCTCATAGGTTTAATTGTCGGTGGACTTGCTAATGTTTCGGACACGGAAACTAGCATCAGGTTATTGCAATGCTTATCAGTTATCACTTCTGGGTTCAGTCTCTCGCCCAAACCTTTCTTCTCAAACTTTGGAGCAATTGTGACATTTGCTATATTTGGTACCTTTTTAGCTTCAATTGTCACGGGTGTTTTAGTTTATCTTGGTGGTTTGATCTACGTCATGTATAGACTCCCTTTTGTCGAGTGCTTAATGTTTGGTGCTCTTATATCAGCAACTGATCCTGTTACTGTTTTGTCCATATTTCAGGAACTTGGCACAGATGTCAACCTATATGCCTTGGTGTTTGGAGAATCAGTTTTGAATGATGCAATGGCAATTTCCTTGTACAGGACAATGTCATTGATCAAAACTGACCCTTCTGGACAAAATTTCTTCATGGTGGTTGTGAGATTTCTGGAGACTTTTGTTGGCTCAATGTCTGCAGGATTGGACATAGATAATCTTCAGAACTTGGAGAGCTGTCTTTTTGTTCTTTTCCCTTATTTCTCGTATATGCTTGCAGAAGGTCTTGGGCTGTCTGGTATTGTATCAATACTATTTACAGGAATAGTCATGAAGCATTACACATATTCGAATTTGTCAGAAAGTTCTCAAAGATTTGTCTCTGCATTTTTCCATTTAATATCGTCATTAGCAGAGACATTTATATTTATATACATGGGCTTTGATATTGCTATGGAACAACATAGCTGGTCACATGTTGGATTTATATTCTTCTCCATTATTTTCATTGGGGTTGCAAGGGCAGCAAATGTCTTCTCTTGTGCTTATCTGGTCAATTTGGTCAGACCTGCAAATCGACAGATACCTCCAAAACACCAGAAAGCGCTTTGGTATAGTGGACTTCGAGGGGCAATGGCCTTTGCCCTTGCTCTGCAATCAGTTCATGATCTTCCAGAAGGACATGGACAGACCATATTCACTGCTACTACAGCAATAGTTGTTCTGACGGTATTGCTAATAGGTGGTTCAACAGGTACTATGCTGGAAGCCCTAGAAGTTGTAGGTGACAGTCATAACACTGATAGCACTTTGAGTTCAGTGGGCACCATCACTAATTTTGATGGGAATAATGGTTATATCGCTCCTTCTTATGATGAAGAATCATCATCTGGCAATAAAATAAAGATGAAACTGAAAGAATTCCACAAGAGTGCTGCATCTTTTACAGCTTTAGATAAAAATTACCTCACCCCATTCTTTACAAGTCAAAATGGAGATGACGAAGATGAAGATGATCCTTTGACAACAAGAAGAACTTTCCACGGCAATGACCATTATTATAACCATCGCTAA | 1533 | 0.407 | MGVEDEISPADPRGAPGKDQQAAGVGILLQIMMLVLSFVLGHVLRRKRIYVIPEASASLLIGLIVGGLANVSDTETSIRLLQCLSVITSGFSLSPKPFFSNFGAIVTFAIFGTFLASIVTGVLVYLGGLIYVMYRLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLIKTDPSGQNFFMVVVRFLETFVGSMSAGLDIDNLQNLESCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKHYTYSNLSESSQRFVSAFFHLISSLAETFIFIYMGFDIAMEQHSWSHVGFIFFSIIFIGVARAANVFSCAYLVNLVRPANRQIPPKHQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALEVVGDSHNTDSTLSSVGTITNFDGNNGYIAPSYDEESSSGNKIKMKLKEFHKSAASFTALDKNYLTPFFTSQNGDDEDEDDPLTTRRTFHGNDHYYNHR | 510 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi11g3019 | 510 | MobiDBLite | consensus disorder prediction | 480 | 510 | - | - | |
| Glsi11g3019 | 510 | PRINTS | Na+/H+ exchanger signature | 105 | 113 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 | |
| Glsi11g3019 | 510 | PRINTS | Na+/H+ exchanger signature | 145 | 155 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 | |
| Glsi11g3019 | 510 | PRINTS | Na+/H+ exchanger signature | 90 | 104 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 | |
| Glsi11g3019 | 510 | Pfam | Sodium/hydrogen exchanger family | 33 | 409 | IPR006153 | GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600 | |
| Glsi11g3019 | 510 | MobiDBLite | consensus disorder prediction | 491 | 510 | - | - | |
| Glsi11g3019 | 510 | Gene3D | - | 138 | 189 | - | - | |
| Glsi11g3019 | 510 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 18 | 491 | IPR018422 | GO:0006812|GO:0015385|GO:0016020|GO:1902600 | |
| Glsi11g3019 | 510 | NCBIfam | sodium/hydrogen exchanger 3 | 32 | 421 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi11g3019 | Glsi-ChrGlsi11 | 25413110 | 25420874 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi11g3019 | 31 | 490 | Antiporters | AT5G55470 | 28.113 | 1.15e-39 | 149 |