Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3018 ATGCGCCAATTGAGGCTATTAATACTGTTGGAGAGGGGAAGAAAAAACGGGTGGGGGAGCATTGAGTGCTTCACAGAACCTAGTGAGATGGGAAGAAGAAACGGAGGTAGAGCACTTCAAGAAATTCTTCGTCGCCGCCTCGAGTCCTGCAAGTCCAGGTACTCAACCACTGATGAAATCGTGAACCATCTTCGTTCAAATTACCCAGATTACCAGCGAACAAAGCAGCAAACTTTGGCTCGATTTGTTCAGGAAGCTTTGGAATCAACTAAGCGTGGTAACAGGCAGTTGAACAGAAAGCCCGTTACTCCTATATTAAAGCATGACGCTTCAGAAGATGACGAGGAGGACGAAGGAGAGGGTGGAAGTGCATCTCGAAAGAGGAGGAAGAAAATTGACGAGAGGGAAGAGAGATTGCAAAAAATGGAAAATTTACACCTTAGAAGATTTCAGAGGGATCAGGGCCGTCCATCAACGTCTCCTGCTTCAACATCTAGTCCATCATCGTCGGAGTCGGGAGAGAGCGATGGCGAAGACGGGGCAGTGTCTACGTCGGAGGATGCAATTTATGGGGAGAAACTGGAGCCCAGCTTTGACTTGATGAAGACAATGTTGCGAGCTTCTTATACAGAAGCGAAAAATGTGAAACCCATTGTGGAGGAGAAAAACCTTGAATTGGAGGTGAACAATAATAGAAAGGCTACTAAGCTTGATGCTGTGAATAATGGAGGTGAGGTGGAATCGGGCTGGGAATCGATGAGGCAATTAAGGGGTTCAGTTTCAAATGGCACTAGTGAAGTTGAGGTGAAGGGGAAGGATGGACCCAGGTTTAAAGATTTGGGTGGTATGAAGGAGGTGTTGGAAGAATTGAAGATGGAGGTGATTGTGCCACTGTACCATCCGCAATTGCCAAGAAGGTTAGGAGTAAGGCCAATGGCTGGGATTTTGTTGCACGGACCACCCGGGTGTGGGAAAACTAAACTGGCTCGTGCTATAGCTAATGAGACTGGTCTTCCGTTCTATCAGATATCGGCTACAGAGGTGGTTTCTGGAGTTTCAGGTGCATCTGAAGAAAATATTAGAGAGCTTTTCTCTAAAGCATACAGGACTGCCCCATCAATTGTCTTTATAGATGAGATTGATGCAATTGCTTCAAAAAGAGAGAATTTACAACGTGAGATGGAGAAAAGAATTGTGACACAGTTAATGACTAGCATGGATCAATCGCACAGACTTCTGCAACCAGCTGATAATTCAGAGAGTTCTAATGATGCCCATCCGGGCTATGTTCTTGTAATCGGAGCTACAAATAGGCCTGATGCTGTTGACCCTGCTCTGAGAAGGCCTGGGCGGTTTGATCGTGAGATTGTCCTTGGTATTCCTGATGAATGTGGAAGGGAGGAGATCTTGTCTGTGCTTACTCACAATCTTAAAGTTGAGGGTTCATTTGATCTTCGAAAAATAGCCAGGGCTACACCAGGTTTTGTTGGAGCTGATTTGGCAGCTCTAGCTAACAAGGCTGGTAACCTGGCAATGAAGAGAATTATTGATGAAAGGAAACGTGAATTATCCCAAGATCTTATGGATGAGCATACTGAAGATTGGTGGAGGGAACCTTGGTTGCCTGAAGAGATAGATAAGCTTGCCATCAAAATGTCTGATTTTGAGGAAGCAGTCAAATTGGTGCAACCTGCATCAAGAAGAGAAGGATTTTCTTCTATTCCTAATGTAAAATGGGAAGATGTTGGTGGGCTTGATCTTCTGAGACAAGAGTTTGAACGCTATATAGTCAGACGCATAAAATATCCAGAGGATTATGAGGGATTTGGGGTGAATCTTGAGACTGGATTTTTGCTTTATGGACCACCAGGTTGTGGTAAAACACTGATTGCCAAAGCTGTTGCGAATGAAGCAGGAGCTAATTTTATTCATATCAAGGGCCCTGAACTTCTAAATAAATATGTTGGAGAAAGTGAGCTAGCAGTTCGGACATTGTTTAGTCGTGCAAGGACATGTTCTCCTTGCATACTCTTTTTTGATGAGGTGGATGCTTTGACAACAAAACGTGGTAAAGAAGGTGGATGGGTTGTTGAACGACTACTGAACCAGTTACTTATTGAGTTAGATGGTGCAGAGCAAAGGCAAGGTGTTTTTGTTATTGGTGCTACAAACAGGCCTGAGGTCATGGACCGTGCTGTCCTTCGGCCTGGTAGGTTTGGTAAACTTCTTTATGTTCCTCTGCCAAGCCCAGATGAGCGAGGTTTAATCTTAAAAGCACTTGGAAGGAAGAAGCCTGTTGATGACAGTGTGGATTTGAGTGCCATTGGAAAAAGGGAAGCTTGTGAAAATCTAAGCGGGGCTGATCTTGCTGCATTGATGAATGAAGCAGCAATGGCGGCTCTTGAAGAGAAATTGACATCAACTGAAAGAACTTGTTATACATTGACCATCAAGGAAAGTCATTTTGAGATAGCACTAAGTAAAATCTCTCCATCTGTATTAGACACGCAAAAACAATACTATCAACGTTTGTCAAAGAGCTTCAAAGCAGCTTGA 2556 0.4401 MRQLRLLILLERGRKNGWGSIECFTEPSEMGRRNGGRALQEILRRRLESCKSRYSTTDEIVNHLRSNYPDYQRTKQQTLARFVQEALESTKRGNRQLNRKPVTPILKHDASEDDEEDEGEGGSASRKRRKKIDEREERLQKMENLHLRRFQRDQGRPSTSPASTSSPSSSESGESDGEDGAVSTSEDAIYGEKLEPSFDLMKTMLRASYTEAKNVKPIVEEKNLELEVNNNRKATKLDAVNNGGEVESGWESMRQLRGSVSNGTSEVEVKGKDGPRFKDLGGMKEVLEELKMEVIVPLYHPQLPRRLGVRPMAGILLHGPPGCGKTKLARAIANETGLPFYQISATEVVSGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTSMDQSHRLLQPADNSESSNDAHPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGIPDECGREEILSVLTHNLKVEGSFDLRKIARATPGFVGADLAALANKAGNLAMKRIIDERKRELSQDLMDEHTEDWWREPWLPEEIDKLAIKMSDFEEAVKLVQPASRREGFSSIPNVKWEDVGGLDLLRQEFERYIVRRIKYPEDYEGFGVNLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAEQRQGVFVIGATNRPEVMDRAVLRPGRFGKLLYVPLPSPDERGLILKALGRKKPVDDSVDLSAIGKREACENLSGADLAALMNEAAMAALEEKLTSTERTCYTLTIKESHFEIALSKISPSVLDTQKQYYQRLSKSFKAA 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3018 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 561 IPR027417 -
Glsi11g3018 851 Coils Coil 125 145 - -
Glsi11g3018 851 FunFam Ribosome biogenesis ATPase RIX7 265 459 - -
Glsi11g3018 851 Gene3D - 264 459 IPR027417 -
Glsi11g3018 851 PANTHER AAA-FAMILY ATPASE 136 849 - -
Glsi11g3018 851 Pfam ATPase family associated with various cellular activities (AAA) 315 458 IPR003959 GO:0005524|GO:0016887
Glsi11g3018 851 Pfam ATPase family associated with various cellular activities (AAA) 618 746 IPR003959 GO:0005524|GO:0016887
Glsi11g3018 851 MobiDBLite consensus disorder prediction 120 153 - -
Glsi11g3018 851 MobiDBLite consensus disorder prediction 90 190 - -
Glsi11g3018 851 FunFam ATPase, AAA family protein 575 753 - -
Glsi11g3018 851 ProSitePatterns AAA-protein family signature. 717 735 IPR003960 GO:0005524|GO:0016887
Glsi11g3018 851 SMART AAA_5 613 749 IPR003593 GO:0016887
Glsi11g3018 851 SMART AAA_5 311 462 IPR003593 GO:0016887
Glsi11g3018 851 ProSitePatterns AAA-protein family signature. 430 448 IPR003960 GO:0005524|GO:0016887
Glsi11g3018 851 MobiDBLite consensus disorder prediction 154 179 - -
Glsi11g3018 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 848 IPR027417 -
Glsi11g3018 851 Gene3D - 461 569 - -
Glsi11g3018 851 FunFam Cell division control protein 48 homolog C 461 569 - -
Glsi11g3018 851 Gene3D - 748 827 - -
Glsi11g3018 851 Gene3D - 575 841 IPR027417 -
Glsi11g3018 851 Pfam AAA+ lid domain 483 518 IPR041569 -
Glsi11g3018 851 Pfam AAA+ lid domain 769 807 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3018 Glsi-ChrGlsi11 25398987 25406134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3018 548 849 Calmodulin-binding Proteins AT3G56690 43.421 4.77e-68 243