Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g3003 ATGCATGCATGCTCTCTATCTGTTTGTGAAAATGCCTCCGTTTGTGTGCTTATGGAAAACCATGGCCCACCAAACCCACCACCTGTTCTGCCACCGCCGTCGTCGTTGTTAATGTCACCACTACCCGAAAGCCCTCCCTTCATCTTCCCTACACCAAGTACTCCTCATTTGGACCCTCAATATCTGCCTGATAATATTGATTGGGTTAACCTTTTCTCTGGCCAAAATAGCTTGTGGCTTGGGGATGCTAACTCAGTTATGGAGGGTGCTTCTGCTTCATCATCATCATCAGCAGCAGCAGCAGCAGCAGCATGTTCTTCTTCTTCTTTAATGGCTGAAAGTGCTATTAATGGAAGAGAAGATGAAAAGGGGATTAATGGGGAGAGAACAAAAGCTGGAAGAATATTGAAGAAGAGAAGCAGACCCAGGTTTGCGTTTCAGACGAGAAGTGCAGATGATATTCTGGACGATGGGTATCGTTGGAGGAAATATGGGCAGAAAGCTGTGAAGAATAGCAAATATCCCAGAAGCTACTACAGGTGCACACATCACACATGCAATGTGAAAAAACAGGTGCAGAGGCTATCCAAAGACACAAGCATAGTGGTGACCACTTACGAGGGAATTCACAACCATCCTTGTGAGAAGCTTATGGAAACCCTAACTCCTCTTCTCAAGCAAATGCAGTTTCTCATCTCTAATTTCTAA 708 0.4492 MHACSLSVCENASVCVLMENHGPPNPPPVLPPPSSLLMSPLPESPPFIFPTPSTPHLDPQYLPDNIDWVNLFSGQNSLWLGDANSVMEGASASSSSSAAAAAAACSSSSLMAESAINGREDEKGINGERTKAGRILKKRSRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSKYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLISNF 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g3003 235 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 65 216 IPR044810 GO:0003700
Glsi11g3003 235 ProSiteProfiles WRKY domain profile. 150 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi11g3003 235 SMART WRKY_cls 155 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi11g3003 235 SUPERFAMILY WRKY DNA-binding domain 148 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi11g3003 235 Pfam WRKY DNA -binding domain 156 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi11g3003 235 Gene3D WRKY domain 140 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi11g3003 235 FunFam WRKY transcription factor 57 141 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g3003 Glsi-ChrGlsi11 25163325 25164495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g3003 127 233 WRKY Transcription Factor Family AT5G41570 71.963 1.13e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi11g3003 WRKY 2.1e-25 CL0274