Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2983 ATGAGCCTCAGCCACAGACACGATGATACCACCACCACTACTGCCACCGACCACCACAAACCCGATGACGATGATGATGATCACGAGCACGATATGGTGATGCCTGGGTTTCGCTTCCACCCAACTGAAGAAGAACTCGTGGAGTTCTACCTTCGCCGTAAGGTGGAAGGCAAACGTTTCAACGTTGAGCTCATCACCTTCCTTGATCTTTATCGTTATGACCCTTGGGAACTTCCTGCCATGGCAGCAATTGGAGAGAAGGAATGGTTCTTCTATGTGCCAAGAGATAGGAAGTATCGAAATGGCGATCGTCCCAACCGAGTTACTACTTCTGGGTATTGGAAGGCAACTGGGGCTGATAGAATGATCCGAACGGAGAACTTCAGATCCATTGGGCTGAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCAAAAGGCATCAGAACTAGTTGGATTATGAATGAGTATCGCTTGCCTCACCATGAAACTGAACGATTGCAAAAGGTAATACTACTATTACTGCACATCCTATGCTTTAAGAGCTTTTAG 552 0.4656 MSLSHRHDDTTTTTATDHHKPDDDDDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHETERLQKVILLLLHILCFKSF 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2983 183 MobiDBLite consensus disorder prediction 1 31 - -
Glsi11g2983 183 Gene3D NAC domain 42 178 IPR036093 GO:0003677|GO:0006355
Glsi11g2983 183 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 30 162 - -
Glsi11g2983 183 FunFam NAC domain-containing protein 35 42 181 - -
Glsi11g2983 183 ProSiteProfiles NAC domain profile. 33 177 IPR003441 GO:0003677|GO:0006355
Glsi11g2983 183 SUPERFAMILY NAC domain 33 165 IPR036093 GO:0003677|GO:0006355
Glsi11g2983 183 Pfam No apical meristem (NAM) protein 35 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2983 Glsi-ChrGlsi11 24915185 24916493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2983 32 177 NAC Transcription Factor Family AT2G02450 89.041 4.15e-96 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi11g2983 NAM 5e-35 No_clan