Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2979 ATGGAAGGCATACCGCATCCAATACCTCGAACAGTTGAAGAGGTTTTCAGCGACTTTAAGGGCCGAAGAACTGGAATGATTAAGGCCCTTACTACGGATGTTGAAAAATTCTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTATATGGATTTCCAAACGAAACATGGCAAGTGAATTTGCCAGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATAAACTTTGCTAGGGACGGGATGCAAGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTTGCTGTTGCTTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGACCTCCCAACCATATTTGAAGTTGTGACAGGAAGTGTTAAGCAATCAAAGGATCAACCGGCTGCTCATAACAATGGTAGCAAAAGCAAATCAAGTGGGAAGTCACGCCAATCTGAGTCTCAGGCCAAGGGAGTGAAGATGTCACCACTTCCTAAAGAAGAGGATGAGAGTGGAGAAGAAGATGAAGATGACGACGAACAAGGTGCAACATGTGGGGCATGTGGTGATAATTATGGCACTGATGAGTTCTGGATCTGCTGTGATGTGTGTGAGAGATGGTTCCATGGCAAATGTGTAAAAATCACTCCTGCTAAGGCTGAGCACATTAAACAATACAAGTGCCCAAGCTGCAGCAACAAGAGGGCTAGAGTTTAG 759 0.4493 MEGIPHPIPRTVEEVFSDFKGRRTGMIKALTTDVEKFYQQCDPEKENLCLYGFPNETWQVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGSVKQSKDQPAAHNNGSKSKSSGKSRQSESQAKGVKMSPLPKEEDESGEEDEDDDEQGATCGACGDNYGTDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2979 252 MobiDBLite consensus disorder prediction 144 195 - -
Glsi11g2979 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Glsi11g2979 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 247 IPR013083 -
Glsi11g2979 252 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Glsi11g2979 252 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Glsi11g2979 252 PANTHER CPG BINDING PROTEIN 9 251 IPR045104 GO:0006355|GO:0042393
Glsi11g2979 252 FunFam PHD finger alfin-like protein 191 247 - -
Glsi11g2979 252 SMART PHD_3 198 246 IPR001965 -
Glsi11g2979 252 MobiDBLite consensus disorder prediction 144 172 - -
Glsi11g2979 252 Pfam PHD-finger 199 248 IPR019787 -
Glsi11g2979 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Glsi11g2979 252 CDD PHD_AL_plant 199 248 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2979 Glsi-ChrGlsi11 24804859 24817527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2979 1 249 Alfin-like Transcription Factor Family AT1G14510 81.124 6.23e-135 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Glsi11g2979 Alfin 9.1e-70 No_clan