Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2976 ATGCGATTCTTTTGCAGCCATACAAGCTTGTTCTCTGTTTTGATCATATTTGGCTACTGTTGTTATGATTTTGGCACTGCCACCTACACTATCACAAGATCTCAATTTATCAAGGACCCCGAAACTCTTAGCTCTAGTGGGAGTTTATTCACACTTGGGTTCTTCAGTCCTGGAAATTCTACAAATCGCTACGTCGGAATTTGGTACAAATCCAAAACTACTGTCCTATGGGTAGCCAATAGAAATCAACCACTGAGGGATTCTGCAGGGATCGTTACGATATCTGAGGATGGCAATCTTGTGGTATTAAATGGTCAGAAACAGATCATTTGGTCATCAAATTTGTCAAAGATTGCATCCAGTTCTAGTTCACGGCTTTTAGATTCTGGAAACCTTGTCCTCCTAGATAACTCTACAGGAAGCACCTTATGGCAAAGTTTTGAGCATCCTTCTGATACATACTTGCCTGGCATGAAAATTACTAGCAACAGAAGAACAGGTGAGAAACTAAAGTTCACATCATGGAAAAGTTTGTCTGATCCATCTGTTGGGAACTTTTATCTGAGTCTTGAACCACTAAATATTCCTGAAATATTTATTTGGAATGAAACTCGCCCATACTGGCGCAGTGGTCCATGGAATGGTCGGGTCTTTGCTGCCGTATCTACAATGAATACTAGGTATCATCATAGTCTTACTCTAGTGGAGGAGGGGGATGGAGCTGTTTATTTGACTTCTGCTTTACCAGATCACTTTGTCGCAGTAATGAATGTCTTAAATTCAGAAGGAAAGTTACAGGAAAAAATTTGGGCTGATGATAAGCAATGGCAATTGAGCTTTACTGTTCAAAACTCAGATTGTGATGTTTATGGTATATGTGGGGCATTTGGAAGCTGCAATTCAAATAGTGGACCGATTTGCAACTGTTTGAGAGGGTTTGAACCAAGTAATATAGAGGAATGGAATAGACAAAACTGGACTAATGGATGTGTTAGGAGGACAGCTCTGAAGTGTGAGAGGGAGAAAAATGGGAGTGCAGAGCGCAAAGAAGATGGGTTTTTGAAACTGCAGATGGTTAAAGTGCCAGATTTTGCAGACTTGTTAGATTTTTCAGAAGATAAATGTAGAAGACAGTGCTTGGAGAATTGCACCTGTATAGCATATTCATATGATTCTAATATTGGTTGTCTGTCTTGGAGAAGAAATCTGATTGACATACAACAGTTCTCTAATGGAGGAATGGATATATATATTCGAGTAGCCTATTCAGATTTTGAAAATGAAAGAGAAGCCGATAAAGAAAAGGAAATATACATGACAATCATCATTACCATTACAGTAATAATAGGAGCCAACATCATTGTCATCTGTGCATACTTCTTATGGAAATGGATAGCTAAACACTCAGCTAGAAAAAGGGAGAGCATAGGGTTCTTATTACTCAACAGACGTCAAGCACATGCAGAAAGCACAAGTGACAACATGATTGGAGAATTGATCACGTATGATTTTGAAAAGATTGCCATTGCCACAAACAACTTTAACTTGTCCAATAAGCTTGGGCAGGGCGGTTTTGGGCCAGTGTATAAGGGAAAACTGCAAGATGGCCAGGACATAGCAGTTAAGAGACTTTCTAGAGCATCTGGACAAGGGCTAGAGGAATTTATCAATGAAGTTGTAGTGATTTCTCAGCTTCAACACCGCAATCTTGTAAGGCTTCTAGGTTGCTGTATCGAAGGAGATGAAAAGATGTTGATCTATGAGTTTATGGCAAATAAAAGTTTGGATGCCTATATTTTTGGTCCAACAGAACAAAAACTCCTATGTTGGAGAAATCGCTTCAACATAATTGATGGAGTAGCTCGAGGGATACTTTATCTTCATAGAGATTCTAGACTTAAAATTATACATAGAGATCTTAAGGCAAGTAACATCTTGCTGGATGAGGAGTTGAATCCAAAAATATCAGATTTTGGTATGGCTAGAATTTTCAAAGAGAGTGAAGATCAGGCCAACACAAGAAGAGTTGTTGGAACCTATGGCTATATGTCTCCAGAATATGCAATTGAAGGATTATTTTCAGAGAAATCAGATGTTTTTAGTTTTGGAGTTTTACTTCTAGAGATTGTCAGTGGAAGAAGAAACTCTAGCTTTTATAACAATGAGCATTCTCTCAGCCTTTTAGGATTTGCATGGAAATTATGGAATGAAGACAACATTTTATCATTAATAGATCTTGAATATGATCCTAACATTGAGAATGATATTTTGAGGTGCCTACACATAGGACTTCTGTGTGTGCAAGAACTTGCAAGAGAGAGGCCCAGTATGAGCACTGTTATTTCTATGCTTCATTGTGAGATTGTCAATCTTCCTCCTCCAGGCCAACCTGCATTCATCCAGTGGCAGAGCATGTCGAGTAGAGTGTCCCCTGAAGAAAACTATGGATTGTTCTCCAACAATAGTGTTAGTATTACAAACATACAAGGTAGATAG 2496 0.3866 MRFFCSHTSLFSVLIIFGYCCYDFGTATYTITRSQFIKDPETLSSSGSLFTLGFFSPGNSTNRYVGIWYKSKTTVLWVANRNQPLRDSAGIVTISEDGNLVVLNGQKQIIWSSNLSKIASSSSSRLLDSGNLVLLDNSTGSTLWQSFEHPSDTYLPGMKITSNRRTGEKLKFTSWKSLSDPSVGNFYLSLEPLNIPEIFIWNETRPYWRSGPWNGRVFAAVSTMNTRYHHSLTLVEEGDGAVYLTSALPDHFVAVMNVLNSEGKLQEKIWADDKQWQLSFTVQNSDCDVYGICGAFGSCNSNSGPICNCLRGFEPSNIEEWNRQNWTNGCVRRTALKCEREKNGSAERKEDGFLKLQMVKVPDFADLLDFSEDKCRRQCLENCTCIAYSYDSNIGCLSWRRNLIDIQQFSNGGMDIYIRVAYSDFENEREADKEKEIYMTIIITITVIIGANIIVICAYFLWKWIAKHSARKRESIGFLLLNRRQAHAESTSDNMIGELITYDFEKIAIATNNFNLSNKLGQGGFGPVYKGKLQDGQDIAVKRLSRASGQGLEEFINEVVVISQLQHRNLVRLLGCCIEGDEKMLIYEFMANKSLDAYIFGPTEQKLLCWRNRFNIIDGVARGILYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGMARIFKESEDQANTRRVVGTYGYMSPEYAIEGLFSEKSDVFSFGVLLLEIVSGRRNSSFYNNEHSLSLLGFAWKLWNEDNILSLIDLEYDPNIENDILRCLHIGLLCVQELARERPSMSTVISMLHCEIVNLPPPGQPAFIQWQSMSSRVSPEENYGLFSNNSVSITNIQGR 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2976 831 Pfam Protein tyrosine and serine/threonine kinase 515 783 IPR001245 GO:0004672|GO:0006468
Glsi11g2976 831 CDD STKc_IRAK 520 784 - -
Glsi11g2976 831 ProSiteProfiles Protein kinase domain profile. 514 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2976 831 SUPERFAMILY Protein kinase-like (PK-like) 495 784 IPR011009 -
Glsi11g2976 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 481 589 - -
Glsi11g2976 831 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Glsi11g2976 831 Gene3D - 24 147 IPR036426 -
Glsi11g2976 831 Gene3D Phosphorylase Kinase; domain 1 476 589 - -
Glsi11g2976 831 CDD B_lectin 34 150 IPR001480 -
Glsi11g2976 831 ProSiteProfiles Bulb-type lectin domain profile. 28 147 IPR001480 -
Glsi11g2976 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 590 792 - -
Glsi11g2976 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Glsi11g2976 831 SMART serkin_6 514 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2976 831 Pfam D-mannose binding lectin 74 176 IPR001480 -
Glsi11g2976 831 SMART ntp_6 348 420 IPR003609 -
Glsi11g2976 831 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Glsi11g2976 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 147 - -
Glsi11g2976 831 Gene3D Transferase(Phosphotransferase) domain 1 590 790 - -
Glsi11g2976 831 SMART blect_4 34 150 IPR001480 -
Glsi11g2976 831 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 215 IPR036426 -
Glsi11g2976 831 Pfam PAN-like domain 348 406 IPR003609 -
Glsi11g2976 831 PIRSF SRK 1 831 IPR024171 GO:0004674
Glsi11g2976 831 CDD PAN_AP_plant 334 421 - -
Glsi11g2976 831 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2976 Glsi-ChrGlsi11 24688619 24691917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2976 476 799 Receptor kinase-like Gene Family AT4G23190 54.819 6.41e-122 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi11g2976 PK_Tyr_Ser-Thr 4.8e-48 CL0016