Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2973 ATGTCAGAAATGCGGGTTTCTGATCCAAGCAAGCTCCGCTTGAAGAAGGAGCTCACTCAAATTCGTAAAGCTGCTCGTGTATTGAGAGATCCTGGCACAACGTCTTCCTGGAAGTCCCCACTTAGTTCATCAAGATCTGTGGCTGCTGGTTCTGCTTCTGCTTCTGCATGGAAGAACAACTTGGATAGTGCCAGTAAAAGATTCAATGGCAACTCTCAACTTCATTCTCATCTCTCTTTGCCAAGTGGGTATATAAATAATAATAGCCACAACAATGGAAAGGAGAAGATGGTGTTCTTGTGCAATTGGAAGAATTACAAATCATCGAGCGAGAAGAGTGGGGCGGAGAAGCATAATGGCGACGAAGATAAAGAAGAAGAAGACGATGAAGATGGTGGTGGCAATGATGGATCTTCGTCCCTTCTGGGAAGTTTCGAGGACAGCCTTAGTGATGCTCGCAATGGTTGGGATTCAAAGAGCGATACTTACTTGAGGGGTGGGACTCGTTCTTCCATTTTCCGGTGTAGAGATGCAAATCTTGTTTCCTTGGGAACACCATCGGACAGAAGAGCAATGGGAATTAAGAAAAAGAGTAAGAAAACCAATACCCATTTGGATATGTTGAGAAAATATCAACAAAGAGAAACCAAGCTAGGCAAAAAGTTAGTAAATTCCAAAATATTGCTAGAAGGGCATCCATCAATGGCTTATAGCCGGGAGGATTCAGTTGAGCTGTCTGATGATACTGAAGATTACTGTAATTCTGAGGATTTAACCCGAATTCCAGGGCCATCTCCTTTGCTTTTGAAACTCAAGCATAAGAATTGGTCTCGCTCTTCATCTAAGTTACCGAGAAGTAACAGAAAAGAGGACTCTTCTTATAGCACCCCTGCATTGTCAACTAGTTCTTATAATAGGTATGGTCAACACAATCCAAGTACCGTTGGATCCTGGGATGGCACAACAACCTCAGTGAATGATGGCGATGATGAGGTAGATGATCCTTTGGATTTGCCTGGCCGCCACGGATGTGGTATTCCTTGCTATTGGTCAAAGAAGACTCCAAAACATAGAGGGATGTGTGGGAGTTGTTATTCTCCTTCACTTTCGGACACATTAAGGAGGAAAGGAAGCAGCATATTCTGTGGAAGTCAAACTATCTATCCTAGACACCGGAGATCCTTATCGAGCTCCAATAAGCGCAGATTTTCCTCAAGGAGTGCACAAGGTGTTCTCCCATTGCTTACTAACAGTGATGATGTTAGAGGAGGGTCATCTCTAGGAACTGGAAGGAGTGATGATGAACTTTCTACAAACTTTGGTGAGCTTGATCTTGAGGGAATTAGCCGATTGGATGGAAGAAGGTGGTCATCAAGTTGTAGGAGTCAAGAAGGACTGGAGATTGTGGCTTTCAATGGGGAAGGGGATGACGAAGGCACGCTGGAAAATACTAGGAGTTTCAGTCAGAAGTATAAGCCAATGTTCTTTGGAGAATTGATTGGGCAGAATATTGTGGTCCAGTCACTTATAAATGCTGTTTCAAGGGGTCGAATTGCTCCTGTTTATCTTTTCCAAGGTCCACGTGGGACTGGTAAAACATCAACAGCAAGGATTTTTGCTGGTGCATTGAATTGTATAGCTCCTAATGAAAGTAAGCCTTGTGGCTACTGTAGGGAATGTACTGATTTCATTTCTGGCAAGAGCAGGGATCTAGTGGAAGTTGATGGAACCAATAAGAAAGGGATTGATAGAGTTAGATATATATTGAAAAGATTATCTGAGGGTTCTTCATCAGCCTTCTCACGATACATGGTCTTTGTTATTGATGAATGTCATTTGTTACCTTCTAAGACATGGCTGGCGTTTCTCAAGTTTCTGGAAGAACCACCTCAGCGTGTTGTATTCATATTTATAACAACTGATCTTGACAACGTGCCCCGAACAATACAATCTAGATGCCAAAAGTACCTTTTTAACAAAATTAAAGATGTAGATATTGTGGACCGGCTGAGAAAAATATCTGCCGAGGAGAACCTGGATGTTGAAACAGATGCATTGGACCTTATTGCTATGAATGCAGATGGTTCACTTCGGGATGCAGAAACTATGTTAGAACAGCTGAGTTTGCTGGGAAAAAGAATTACCACTTCTCTTGTCAATGAACTTGTGGGTGTTGTTTCTGATGAAAAGTTATTGGAACTTTTGGAGTTAGCGATGTCATCAGACACTGCAGAAACAGTGAAAAGAGCCAGAGAATTGATGGATTCTGGAGTTGATCCTATTGTTTTGATGTCCCAGCTGGCCAGTCTCATTATGGACATCATTGCCGGATCATATACTGTCATTGAAGACAAACCTGGTGATTCGCTCTTTGGTGGACGAAGTTTGAATGAATCAGAGTTGGAGAGATTAAAGCATGCTTTAAAGCTTCTCTCAGAGGCTGAGAAACAAATAAGGACTTCTAGTGAACGCTCAACATGGTTCACAGCTACTCTGTTACAGCTTGGTTCAACGTCCTCTCCAGATCTTACCCAGACAGTCAGCAGCAGACGGCAGAGCTGCAAGACAACAGATGATGACCCATCTCGTGCTTCAAGAGAAGTAACTGCTTACAAGCATAATTCAGATGTTCAATATATAACTCGAAAATCAACATCCCCTGCATCCCTGCAAAAGGCAGTTAATGGTAACCCCAGCCATCATAGGGAGATATCATCAAAGTTTGATGGTTTCAGCTTGAATTCGAAGCGGTCAACTAGCCCAGTCATGGATGCTGGTGCCACACCTCTCTCATGTGGTGATCTTACCATTAGTAATATAATGTTTAAATGCATTGATTCAGGGAAGTTACATGATATCTGGGCACATTGTATTGGGAGGTGTCACTCGAAGACATTAAGGCAGCTGCTACATAATCATGGAAAGCTTGTATCCATATGTGAAGTTGAAGGTCTTCTGGTTGCATATGTTGCATTTGGTGATGGAGATATTAAACTCAGGGCCGAAAGGTTTTTGAGCAGCATTACAAACTCCATGGAAATGGTTCTTAGACGCAATGTAGAGGTCAGGATTATCCACCTGCCTGATGGTGAAGGTGAAGATCGGATCAATCTACCAGGTCTAAAGCAGGCAGAATCAATAGTAGCAAGTGAGAAGGAACACAAAGGAGGTCATGTGAAAGGAAGAGACGCTTATTCTAATCTTCCTCCTTTGCTGGATGGAAACTTTCCACCCACCACTGGTTCATCAGATTTACTAGCCGAAGGAAATCGTGTGAGAGAGAGGAGACCAGATATTCCAATGCAGAGGATTGAATCCATTATTCGTGAGCAGAGGCTGGAAACTGCATGGTTACAGGCTGTAGAAAAAGGTTCCCCTGGATCATTGAGTCGTTTGAGACCTGAGAAGAATCAGGTTCTGCCTCAGGATGGTATCTACTGTAAAGACCCGACAGAATCCATGGATTCAACAAGGTTTTCCTCTCAGCATTGGGAAGATGACATCAATCATCAACTCAAAGTTTTGAAAGTTAAAAATGGAAGGGCCCTACCGAAGGATCAGATTGGAAGAAGGGTTGATAGTTATCCCATGTCCCCTAGTTTATTGCATGATAGCAGTTTAGCTACCAATTCCAGTAAAGACAATCTGGGATATGAATCAGGCTCAGGAGCTAGAGGTTGTAGTGGATTTTTATGTTGGAATAACCCCAAGCGTAGAAGGTTAAAGGTAAGAGGTACCCCAGTTGGAGGCCGTAAAGTTGGAAGATTTTCATTGTTTGGTGAGTGCAGCAAGCCTAAGAAAAAGGAGTTCAGAATATAA 3819 0.4268 MSEMRVSDPSKLRLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAGSASASAWKNNLDSASKRFNGNSQLHSHLSLPSGYINNNSHNNGKEKMVFLCNWKNYKSSSEKSGAEKHNGDEDKEEEDDEDGGGNDGSSSLLGSFEDSLSDARNGWDSKSDTYLRGGTRSSIFRCRDANLVSLGTPSDRRAMGIKKKSKKTNTHLDMLRKYQQRETKLGKKLVNSKILLEGHPSMAYSREDSVELSDDTEDYCNSEDLTRIPGPSPLLLKLKHKNWSRSSSKLPRSNRKEDSSYSTPALSTSSYNRYGQHNPSTVGSWDGTTTSVNDGDDEVDDPLDLPGRHGCGIPCYWSKKTPKHRGMCGSCYSPSLSDTLRRKGSSIFCGSQTIYPRHRRSLSSSNKRRFSSRSAQGVLPLLTNSDDVRGGSSLGTGRSDDELSTNFGELDLEGISRLDGRRWSSSCRSQEGLEIVAFNGEGDDEGTLENTRSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAGALNCIAPNESKPCGYCRECTDFISGKSRDLVEVDGTNKKGIDRVRYILKRLSEGSSSAFSRYMVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDLDNVPRTIQSRCQKYLFNKIKDVDIVDRLRKISAEENLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGSYTVIEDKPGDSLFGGRSLNESELERLKHALKLLSEAEKQIRTSSERSTWFTATLLQLGSTSSPDLTQTVSSRRQSCKTTDDDPSRASREVTAYKHNSDVQYITRKSTSPASLQKAVNGNPSHHREISSKFDGFSLNSKRSTSPVMDAGATPLSCGDLTISNIMFKCIDSGKLHDIWAHCIGRCHSKTLRQLLHNHGKLVSICEVEGLLVAYVAFGDGDIKLRAERFLSSITNSMEMVLRRNVEVRIIHLPDGEGEDRINLPGLKQAESIVASEKEHKGGHVKGRDAYSNLPPLLDGNFPPTTGSSDLLAEGNRVRERRPDIPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGIYCKDPTESMDSTRFSSQHWEDDINHQLKVLKVKNGRALPKDQIGRRVDSYPMSPSLLHDSSLATNSSKDNLGYESGSGARGCSGFLCWNNPKRRRLKVRGTPVGGRKVGRFSLFGECSKPKKKEFRI 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2973 1272 CDD AAA 500 658 - -
Glsi11g2973 1272 FunFam DNA polymerase III subunit gamma/tau 662 724 - -
Glsi11g2973 1272 Pfam DNA polymerase III subunits gamma and tau domain III 715 834 IPR022754 GO:0003887
Glsi11g2973 1272 NCBIfam DNA polymerase III subunit gamma/tau 486 835 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Glsi11g2973 1272 Pfam DNA polymerase III, delta subunit 501 661 - -
Glsi11g2973 1272 MobiDBLite consensus disorder prediction 885 901 - -
Glsi11g2973 1272 MobiDBLite consensus disorder prediction 239 259 - -
Glsi11g2973 1272 MobiDBLite consensus disorder prediction 32 52 - -
Glsi11g2973 1272 MobiDBLite consensus disorder prediction 885 906 - -
Glsi11g2973 1272 CDD HLD_clamp_pol_III_gamma_tau 661 724 IPR045085 -
Glsi11g2973 1272 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 489 876 - -
Glsi11g2973 1272 MobiDBLite consensus disorder prediction 839 865 - -
Glsi11g2973 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 510 708 IPR027417 -
Glsi11g2973 1272 SUPERFAMILY post-AAA+ oligomerization domain-like 732 833 IPR008921 GO:0003677|GO:0006260
Glsi11g2973 1272 MobiDBLite consensus disorder prediction 109 144 - -
Glsi11g2973 1272 MobiDBLite consensus disorder prediction 290 325 - -
Glsi11g2973 1272 SMART AAA_5 518 668 IPR003593 GO:0016887
Glsi11g2973 1272 MobiDBLite consensus disorder prediction 276 337 - -
Glsi11g2973 1272 Coils Coil 797 824 - -
Glsi11g2973 1272 Gene3D - 663 724 - -
Glsi11g2973 1272 Gene3D - 478 659 IPR027417 -
Glsi11g2973 1272 MobiDBLite consensus disorder prediction 25 52 - -
Glsi11g2973 1272 FunFam DNA polymerase III subunit gamma/tau 482 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2973 Glsi-ChrGlsi11 24549922 24558287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2973 480 828 Core DNA Replication Machinery Family AT1G21690 23.823 7.18e-15 75.9