Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2966 ATGGAACTTTCCAGTGAAGAAGGAGGAGAAATCCCAATCCCAATAAACAGTACTACTTATGGTGGGGGACATGGTAATGGGCATGGTCACATAATACATCATCATGACCCTATTCCTCCTCCTCCTCCTCCTCCTCGTCCCCAAGACCCTTCAAATGGCTCCTCTATGGAGGACCACCAAGGGGCCTACAAGAAAGTGGCAATAATCAGGTACAGAGAGTGCCTCAAGAACCATGCAGCCTCAATGGGAGGGAATGCTACTGATGGGTGTGGTGAGTTCATGCCAAGTGGACAAGAAGGCACCATAGAAGCTCTCACCTGCTCTGCCTGTCATTGCCACAGAAACTTCCACAGAAAAGAAGTTGAAGGTGATGATCATGATCAGCCCTACAAGAGGAAGTTTCATCTGGGGTACCCTACACCACCACCAGGTACCATCCTCCCTTCAAGAACTGTACCGCCACCACCCCACCACATGATACTGCCCTACAATATCATGGGACCCCTCTCTTCAGATCAATCTGATCATGAACAAGAAGGTGGACGAATGGAGGCTAGACAACCATTACAGCTAGTGAAGAAGAGGTTCAGGACAAAGTTCACTCAAGAGCAGAAGGAGAAAATGCTGGGGTTTGCGGAGAAAGTTGGTTGGAAAATTCAGAAGCAAGAAGAATCTGTGGTTCAACAGTTCTGCCAAGAGATTGGGATCAAAAGAAGAGTGCTTAAGGTTTGGATGCACAACAATAAGCACAATCTAGCCAAAAAGAATCCCCCAAGTCCTACTACTGCTTAA 792 0.4735 MELSSEEGGEIPIPINSTTYGGGHGNGHGHIIHHHDPIPPPPPPPRPQDPSNGSSMEDHQGAYKKVAIIRYRECLKNHAASMGGNATDGCGEFMPSGQEGTIEALTCSACHCHRNFHRKEVEGDDHDQPYKRKFHLGYPTPPPGTILPSRTVPPPPHHMILPYNIMGPLSSDQSDHEQEGGRMEARQPLQLVKKRFRTKFTQEQKEKMLGFAEKVGWKIQKQEESVVQQFCQEIGIKRRVLKVWMHNNKHNLAKKNPPSPTTA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2966 263 MobiDBLite consensus disorder prediction 1 58 - -
Glsi11g2966 263 FunFam Zinc-finger homeodomain protein 2 181 254 - -
Glsi11g2966 263 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 120 IPR006456 -
Glsi11g2966 263 SUPERFAMILY Homeodomain-like 192 254 IPR009057 -
Glsi11g2966 263 Gene3D - 173 255 - -
Glsi11g2966 263 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 56 252 - -
Glsi11g2966 263 NCBIfam homeobox domain, ZF-HD class 193 249 IPR006455 -
Glsi11g2966 263 MobiDBLite consensus disorder prediction 36 50 - -
Glsi11g2966 263 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 70 121 IPR006456 -
Glsi11g2966 263 Pfam ZF-HD protein dimerisation region 69 121 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2966 Glsi-ChrGlsi11 24328801 24329592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2966 64 255 ZF-HD Transcription Factor Family AT2G02540 57.143 1.34e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi11g2966 ZF-HD_dimer 3.9e-29 No_clan