Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2960 ATGGCATTTATGGCTTCAAATCACACGTCTGGTGGAAACAACGCAGGGGCAACCAATGATGCTTTATACAGGGAATTGTGGCATGCCTGTGCTGGTCCCCTTGTCACTCTTCCTCGGGAAGGGGAGCGAGTTTATTACTTTCCACAGGGTCACATGGAACAGCTTGAGGCATCAATGCATCAGGGATTAGAGCAGCAAATGCCTTCCTTCAATCTGCCTTCTAAAATTCTATGCAAGGTCGTCAATGTTCATCTTCGGGCTGAATCTGAAACAGATGAAGTCTATGCACAGATAACTTTGCTTCCTGAAACTGATCAAATTGAGGTGACAAGCCCCGATGATCCTCTGCCAGAACCTCTGAGGTGCACAGTACATTCCTTTTGCAAAACGCTTACTGCATCTGACACCAGCACTCATGGAGGTTTTTCTGTTCTTCGAAGACATGCAGATGATTGTCTGCCACCACTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCGTTTTCGGCATATTTTTCGAGGGCAACCGAGGCGCCACTTACTTACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTGGTTGCTGGTGATGCATTTATATTCCTAAGAGGTGAAAATGGAGAACTGCATGTTGGAGTTAGGAGGCTCATGAGACAGCAAAGCAACATGCCCTCATCTGTTATATCCAGTCACAGTATGCATCTTGGTGTTCTAGCCACTGCGTCTCATGCCATTACCACTGGAACACTGTTTTCCGTGTTTTATAAGCCCAGAACAAGCCGATCAGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTCGGAGTCATAAGCTTTCTGTTGGGATGAGATTCAAGATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGAAAATAAATCACCTGTCTGGGCTGATTCTGAGTGGCGATCATTAAAGGTGCAATGGGATGAACCATCATCAATTTTGCGTCCTGATAGAGTTTCTCCTTGGGAATTGGAGCCACTTGTGGCCACCACTCCTACGAACTTGCAACCAACCCAAAGAAACAAGAGGGCTCGGCCTTCTGCTCTACCTTCAACAGTCCCTGATACTTCTCTGCATGGTGTGTGGAAATCACCAGTTGAATCTCCATCTTTCTCTTATCGTGACTCACAACATGGACGGGACCTCTATCCATTACCCAAGTTCAATTCTACTGCAGCTAACTTTCTTGGTTTTAGTGGGAATAGCTCTATGGGGGCTGGTTCCAACAATTCAATATATTGGTCTAATAGGGTGGATAACTCCACAGAGTATTTTTCACCCATAGCTCTTAAAGAATCTGGTGAAAAGAAACAAGGCACTGGAAATGGCTGTAGACTCTTTGGGATTCAGCTACTTGAGAATTATAATGTAGAAGAAAGTTTTCCGGCCACATTGTCAGAAAGGGTGGGGGATGATAGGTTTGGTCCATGTTTAGATGCTGAGTCTGACCAGCATTCTGAACCTTCAAATGTCATTCGATCTTATATTCCATCAGCAATTAATGATGCTGACAAATCATGCCTTCAGTCTCCTCAGGAGTCACAAAGCAGGCAAATAAGGAGCTGTACTAAGGTTCACATGCAAGGAATGGCTGTTGGCAGGGCTGTGGATTTGACACGGTTTGATGGATATGAGGATCTGCTTAGGAAATTGGAGGAAATGTTTGACATCAAGGGTGAGCTTGGTGGATCCAGAAAAAAATGGCAGGTTGTTTACACTGATAATGAAGATGATATGATGATGGTTGGAGATGATCCATGGCATGAGTTCTGTGCTGTGGTGAGGAAAATTTTCGTCTACACACCAGAAGAGGTGAAGAAGCTTTCACCCAAGATAGGACTTCCAGTCAACGAAGGAGGTAAACCAAGCAAGTCGGATTCCGAAGCAGCACCCATTACTGAGGACCAGTCATCTATTGTGGGGCCTGGTTGCTAA 2028 0.4497 MAFMASNHTSGGNNAGATNDALYRELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVHLRAESETDEVYAQITLLPETDQIEVTSPDDPLPEPLRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWRFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELHVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAITTGTLFSVFYKPRTSRSEFIVSVNKYLEARSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGENKSPVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVATTPTNLQPTQRNKRARPSALPSTVPDTSLHGVWKSPVESPSFSYRDSQHGRDLYPLPKFNSTAANFLGFSGNSSMGAGSNNSIYWSNRVDNSTEYFSPIALKESGEKKQGTGNGCRLFGIQLLENYNVEESFPATLSERVGDDRFGPCLDAESDQHSEPSNVIRSYIPSAINDADKSCLQSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKGELGGSRKKWQVVYTDNEDDMMMVGDDPWHEFCAVVRKIFVYTPEEVKKLSPKIGLPVNEGGKPSKSDSEAAPITEDQSSIVGPGC 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2960 675 Gene3D - 546 640 - -
Glsi11g2960 675 MobiDBLite consensus disorder prediction 360 387 - -
Glsi11g2960 675 MobiDBLite consensus disorder prediction 641 675 - -
Glsi11g2960 675 SUPERFAMILY CAD & PB1 domains 553 627 - -
Glsi11g2960 675 SMART B3_2 127 229 IPR003340 GO:0003677
Glsi11g2960 675 Pfam AUX/IAA family 530 587 IPR033389 -
Glsi11g2960 675 Pfam AUX/IAA family 598 641 IPR033389 -
Glsi11g2960 675 SUPERFAMILY DNA-binding pseudobarrel domain 117 256 IPR015300 -
Glsi11g2960 675 Gene3D - 124 229 IPR015300 -
Glsi11g2960 675 FunFam Auxin response factor 290 362 - -
Glsi11g2960 675 FunFam Auxin response factor 546 640 - -
Glsi11g2960 675 CDD B3_DNA 125 227 IPR003340 GO:0003677
Glsi11g2960 675 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi11g2960 675 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Glsi11g2960 675 Gene3D - 290 363 - -
Glsi11g2960 675 FunFam Auxin response factor 125 229 - -
Glsi11g2960 675 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Glsi11g2960 675 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 640 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi11g2960 675 ProSiteProfiles PB1 domain profile. 551 644 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2960 Glsi-ChrGlsi11 24180499 24188362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2960 5 669 B3 DNA Binding Superfamily AT1G59750 72.455 0.0 943
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi11g2960 AUX_IAA 7.7e-12 CL0072