Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2955 ATGATGGAGGGGAAGGGGGAAGAGAGGGACTTGGAGATAGAAGGGATGGCGGTGATGATGGGGGGGAGTAGTATTGGTGGGAAAGAGGAGAGGTTGGAGAGGGATAGATCAAGTTCAGCTGAAGACAAAGATCATTGGCTCAGAGAGCCATTGCTTGTGAAGAATAATAGGATGAACACCACTTCACAGCTAGCTATTGTCGGAGCCAATGTCTGCCCAATTGAAAGTCTTGACTATGAGATCATTGAGAATGATCTTTTTAAGCAAGACTGGAGGTCTAGAACTAAGGTTGAGATATGCCAGTATGTTGTTCTTAAATGGACACTCGCACTTCTCATCGGTTTAAGTACAGGGCTTGTCGGGTTCTTTAATAACCTTGCTGTTGAGAATATTGCTGGTTTCAAGCTACTTCTCACCAACAATCTCATGCTTAAGGAAAAGTATTATCAGGCCTTTGCAGCACTTGCGGGTTGCAACATGATTTTGGCCATTGCTGCTGCGGCCCTGTGTGCCTACATTGCCCCTGCAGCGGCAGGGTCTGGCATACCCGAGGTGAAGGCATACCTCAATGGTATAGATTCTCATTCTATTTTGGCTCCCAGTACTCTCTTTGTAAAGATTTTTGGTTCAATTTTTGGGGTTGCTGCGGGATTTGTTGTTGGTAAGGAAGGACCTATGGTACATACTGGTGCTTGCATAGCTAATTTACTTGGACAAGGCGGTTCTCGGAAATATCGGCTGACCTGGACATGGCTCAGATTCTTTAAAAATGACCGAGACCGAAGGGATTTGATTACATGTGGTGCAGCTGCTGGTGTTGCTGCTGCATTTCGTGCCCCAGTTGGTGGTGTCCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTTTGTGGCGGACTTTCTTCACAACTGCAGTGGTAGCAGTAGTGCTAAGAAGTTTTATGGAATTTTGCCGGGGTGGAAAATGTGGTCTTTTCGGTGAAGGCGGTTTGATAATGTTTGATGTTAATCAAGCAAAGCCTGCATACAGCACCCCTGACCTCTTGGTAGTTATATTTATTGGAGTTGTGGGAGGCATCTTGGGAAGCCTTTACAATTATCTTGTGGACAAGGTCCTTCGCAGTTATAGCATCATAAATGAGAGAAGCCCTATATTCAAGATTGTACTTGTTGTCATTATCTCTTTTTTGACCTCTTGTTGTTCATATGGCCTTCCATGGCTATCACAATGCATCCCTTGTCCTCCAAACTTGGGGGACCTGTGCCCCACTATAGGTCGCTCAGGACACTACAAAAACTATCAATGTCCACCTAACCACTACAATGACCTTGCCTCTCTCTTTTTCACTACTAACGATGATGCTATCCGCAGCCTCTTCATCTCCGGCTCAGACAAGGCGTTTCAGCTCTCTACTCTTCTAATCTTCTTTGTGGCAATATACTTCCTTGGGATTATCACTTATGGAATTGCTGTTCCCTCCGGGCTCTTCATTCCTGTCATACTTGCTGGAGCCTCATACGGGCGCCTTGCAGGAAGACTTTTGAGTCCATTCACTGTTCTTGATGTGGGATTGTTTGCCCTCCTTGGAGCTGCATCTTTCCTAGGTGGAACCATGAGAATGACTGTTTCTCTTTGTGTCATACTTCTTGAACTCACTAATGATCTACTAATGCTCCCATTGGTGATGCTGGTTCTCCTTATTTCAAAAACTGTGGCTGATAGCTTCAATAAAGGTGTATATGATCAGATTGTGAAAATGAAAGGGCTGCCTTACTTGGAAGCACACGCAGAACCCTACATGAGGCATTTAGTTGCAAGTGATGTTGTTTCTGGCCCATTGATTACATTTTCTGGGGTTGAAAAAGTGGGGAATATCATTCATGCCTTGAATATAACGAGGCACCATGGGTTTCCTGTTATCGATGAGCCTCCTTTCTCTGATGCTCCCGAGTTGTGTGGGTTGGTTTTGAGGTCTCATCTGCTTGTGCTTCTTAAGAAGAAGAAGTTCACAAAGCTGAAGGTGAAGACTGGATCTACCACCATGGAGAGCTTCAAAGCACGTGATTTTGCAAAGCCGGGTCTAGGCAGGGGCCTCAAGCTCGAGGACTTGGACATTTTAGATGAGGAATTGGAAATGTATGTTGATCTCCATCCAATTACTAATAGTTCACCATATACAGTAGTAGAAACGATGTCTCTAGCGAAAGCTGCAATTCTTTTCCGGGAGTTGGGCCTCAGGCATTTGTTGGTGGTGCCTAAGACACTAGGAAGGCCTCCAATAGTGGGGATCCTAACAAGGCATGACTTCATGCCTGAGCATATTTTGGGACTATATCCTCACTTGGACCCTCACAAGTAG 2370 0.4527 MMEGKGEERDLEIEGMAVMMGGSSIGGKEERLERDRSSSAEDKDHWLREPLLVKNNRMNTTSQLAIVGANVCPIESLDYEIIENDLFKQDWRSRTKVEICQYVVLKWTLALLIGLSTGLVGFFNNLAVENIAGFKLLLTNNLMLKEKYYQAFAALAGCNMILAIAAAALCAYIAPAAAGSGIPEVKAYLNGIDSHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSRKYRLTWTWLRFFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSFMEFCRGGKCGLFGEGGLIMFDVNQAKPAYSTPDLLVVIFIGVVGGILGSLYNYLVDKVLRSYSIINERSPIFKIVLVVIISFLTSCCSYGLPWLSQCIPCPPNLGDLCPTIGRSGHYKNYQCPPNHYNDLASLFFTTNDDAIRSLFISGSDKAFQLSTLLIFFVAIYFLGIITYGIAVPSGLFIPVILAGASYGRLAGRLLSPFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLMLPLVMLVLLISKTVADSFNKGVYDQIVKMKGLPYLEAHAEPYMRHLVASDVVSGPLITFSGVEKVGNIIHALNITRHHGFPVIDEPPFSDAPELCGLVLRSHLLVLLKKKKFTKLKVKTGSTTMESFKARDFAKPGLGRGLKLEDLDILDEELEMYVDLHPITNSSPYTVVETMSLAKAAILFRELGLRHLLVVPKTLGRPPIVGILTRHDFMPEHILGLYPHLDPHK 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2955 789 MobiDBLite consensus disorder prediction 27 42 - -
Glsi11g2955 789 CDD CBS_pair_voltage-gated_CLC_euk_bac 609 776 - -
Glsi11g2955 789 FunFam Chloride channel ClC3 98 413 - -
Glsi11g2955 789 CDD ClC_6_like 75 596 - -
Glsi11g2955 789 SUPERFAMILY Clc chloride channel 84 599 IPR014743 -
Glsi11g2955 789 PRINTS Chloride channel signature 545 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi11g2955 789 PRINTS Chloride channel signature 527 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi11g2955 789 PRINTS Chloride channel signature 175 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi11g2955 789 PRINTS Chloride channel signature 495 515 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi11g2955 789 PRINTS Chloride channel signature 206 225 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi11g2955 789 PRINTS Chloride channel signature 270 289 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi11g2955 789 PRINTS Chloride channel signature 583 597 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi11g2955 789 PRINTS Plant CLC chloride channel signature 291 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi11g2955 789 PRINTS Plant CLC chloride channel signature 323 330 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi11g2955 789 PRINTS Plant CLC chloride channel signature 305 315 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi11g2955 789 PRINTS Plant CLC chloride channel signature 447 463 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi11g2955 789 PRINTS Plant CLC chloride channel signature 80 88 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi11g2955 789 SMART cbs_1 616 669 IPR000644 -
Glsi11g2955 789 SMART cbs_1 727 778 IPR000644 -
Glsi11g2955 789 Pfam CBS domain 725 773 IPR000644 -
Glsi11g2955 789 Pfam Voltage gated chloride channel 163 577 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi11g2955 789 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 49 779 - -
Glsi11g2955 789 SUPERFAMILY CBS-domain pair 600 774 IPR046342 -
Glsi11g2955 789 ProSiteProfiles CBS domain profile. 723 787 IPR000644 -
Glsi11g2955 789 Gene3D Clc chloride channel 98 596 - -
Glsi11g2955 789 Gene3D - 597 779 IPR046342 -
Glsi11g2955 789 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2955 Glsi-ChrGlsi11 24118485 24126909 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2955 5 789 Ion Channels AT5G49890 76.845 0.0 1193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2955 11 24118485 24126909 Glsi11g2955 11 24118485 24126909 ECH