Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2952 ATGCGAAGTATGGCTGGAGTTTCCCAATCTGTATCGCCTAAACCCGGTGAATGGGTGAAGGGAAAATTGGTTGGATCAGGATCTTTTGGTACTGTTCATTTGGCCATGAGCAAATCCACTGGAGGATTATTTGTTGTGAAATCAGCACACTCAGGGGCTGGATATGAGTCATTGGAGAATGAGGTCAACATTCTCAAGACTTTAGATTCGTCCCCTTATATTGTCCAATGCTTAGGGTCAGAAAGAGATGGAGGTGATCTCAATGTTCTAATGGAGTACATGGCTGGGGGGAGTTTGGCAGATGTGGCAGAGAAATTTGGTGGGTCATTAGGGGAAGAGATAGTTCGTTTGTACACTAAAGAAATCCTTCATGGCTTGAAGTATCTTCACCAGCATGGGATTGTGCATTGTGATCTCAAGTGCAAAAATGTGCTTCTGGGGTCATCTGGGAATATCAAATTGGCAGATTTTGGATGTGCAAAAAGGGTAAAGGACTTTAAGGCTCATGGAGGTTTGGCGAACTCTTTGCAGTCTATAAGTGGGACACCTCTATGGATGGCTCCTGAAGTTTTGAGGAATGAAAAGCTTGATTTTGCTGCAGATATTTGGTCTTTGGGATGCACTGTTATTGAAATGGCTACTGGCAGGGTTCCTTGGGGAGGTGATGTTTCAAACCCAATGGCTGCTCTTTTGAAGATTGCTTGTGGGAATGATTTACCTCAATTTCCAACCCATTTCTCTGATCAGGGTTTGGATTTCTTGACCAGGTGCTTCGAAAGAGACCCAAGAAAGAGGTGGACAACTGAGGAGTTGCTTAGGCATCCATTTGTTTCAAGCAATCCTTCAACACCACCTTCTCAGAAAGGTTGTGCTTACTCACCAGCTAGTGTTTTGGGGATTCAAAGTTTTGAGGATACCTATGATTTGGATGAGCCAGAAAGTCCAGATGAGAATGATTTCTCAGTCAGAAACCCATTCATGTGGCTGCAGGGAGAAGACAGTGGATTTGGTTCATCAGATAACTGGATTACTGTCAGATCATGCTGA 1047 0.4384 MRSMAGVSQSVSPKPGEWVKGKLVGSGSFGTVHLAMSKSTGGLFVVKSAHSGAGYESLENEVNILKTLDSSPYIVQCLGSERDGGDLNVLMEYMAGGSLADVAEKFGGSLGEEIVRLYTKEILHGLKYLHQHGIVHCDLKCKNVLLGSSGNIKLADFGCAKRVKDFKAHGGLANSLQSISGTPLWMAPEVLRNEKLDFAADIWSLGCTVIEMATGRVPWGGDVSNPMAALLKIACGNDLPQFPTHFSDQGLDFLTRCFERDPRKRWTTEELLRHPFVSSNPSTPPSQKGCAYSPASVLGIQSFEDTYDLDEPESPDENDFSVRNPFMWLQGEDSGFGSSDNWITVRSC 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2952 348 ProSiteProfiles Protein kinase domain profile. 18 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2952 348 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 16 306 - -
Glsi11g2952 348 SMART serkin_6 18 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2952 348 CDD STKc_MAPKKK 17 277 - -
Glsi11g2952 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Glsi11g2952 348 Gene3D Transferase(Phosphotransferase) domain 1 14 307 - -
Glsi11g2952 348 SUPERFAMILY Protein kinase-like (PK-like) 16 315 IPR011009 -
Glsi11g2952 348 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Glsi11g2952 348 FunFam MAP kinase kinase kinase18 12 324 - -
Glsi11g2952 348 Pfam Protein kinase domain 20 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2952 Glsi-ChrGlsi11 24074490 24075536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2952 8 328 MAP Kinase Kinase Kinase AT5G55090 42.771 4.04e-74 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Glsi11g2952 Pkinase 2.4e-62 CL0016