Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2945 ATGGGTTGTATATGTTCGAAAGGAACATCTTCAACTGAGTACGTTGCTGAAAACCTTAACAACAACAAAGTTTCAAAGGCAAATAGATCCTCAAAACATTTGAGTACTCCCCTAAGGGGAGAGAAGGTCACAATAGAGGCTGATGGTGGTGGTAATGATGCTACTGCACGGTTAATATCTAATCCGTCTTGCGATGGAACTGCAGGGTCTACTCCCACTTCATCAGATGAGGGGGAGAAGAATGTGGAAACTGCTGGAAAGCCTGCTAAAATACTGGTTCAGACAGGCTTAAACGTGGGAATTGGAAATGGAGGACAAGGACAACCTACGGTGACTAGGATAGTCAGTATAACTAAAGGGGAAAGAGGAGCGCAAGTCCTGGCCGGATGGCCTTCTTGGCTTAGTGCAGTTGCGGGGGAAGCCATTAATGGTTGGATACCTCGCAGAGCAGATTCATTTGAGAAGTTGGATAAGATTGGGCAAGGAACTTACAGCAGTGTCTACAGAGCCCGTGATCTTGAAACAAATAAAATTGTTGCATTGAAGAAGGTTCGATTTACTAATATGGACCCAGAAAGTGTTCGTTTTATGGCAAGAGAAATTATTGTACTGCGGAGGCTTGATCATCCAAATGTCATGAAGCTTGAAGGCATCATTACTTCTAGGGTCTCGGGAAGCTTGTATCTTGTTTTTGAATACATGGAACATGATCTTGCAGGGCTTGCAGCAATACCTGGCATCAAGTTCACTGAAGCACAGATCAAATGTTATATGCAACAGCTGCTTTGTGGTATTGAACATTGCCACAGTCATGGTGTTCTGCACCGAGACATCAAGGGCTCAAATCTTCTTATTGACAAGAATGGCAATCTAAAGATTGGTGATTTTGGGCTAGCAACTTTGTTTCAGCCATCTAATGGGCAGCTTTTAACAAGTCGTGTGGTGACCTTGTGGTACCGACCACCTGAACTTCTACTGGGAGCTACAAATTATGGTGGTGCTGTGGACTTGTGGAGTGCTGGTTGCATTCTTGCTGAGTTGTTTGCTGGAAAGCCAATAATGCCTGGACGAACGGAGGTGGAGCAACTACATAAAATCTTTAAACTCTGTGGATCACCTTCTGAAGAATATTGGAAGAAGTCAAAGCTACCACATGCAACAATTTTCAAGCCTCAAAATCCCTACAAACGGGTTGTTTCTGAGACATTCAAGGATTTTCCTTCATCAACACTAAGCCTTTTGGAGGTCCTTCTTGCTATAGAACCCGAGGATCGAGGAACTGCTTCTTTAGCACTTCAGAGCGAGTTCTTCACAACAAAGCCGCTTCCTTGTGATCCATCTACTCTGCCAAAGTACCCACCAAGTAAGGAGATTGATGCCAAGTTTCGACAAGAGGAAGCCAGAAGGAGAAGAGCTGCAAGTATTAAAGGACATGAAGAGGAATCAGTTAGGAGGGGTTCCAGAGAATCTAAAGCTGTGCCAGCACCTGATGCTAATGCTGAGTTGCGGGCATCAATAGAGAAGAGACAAGGGCAGTCTAAACCTAAATGCAACAGTGAGAAGTACAATGCCGAAGAGGGTGATGGTTCTGGCTTCCTTATTGAACCTTCTAGGGAAAAAGCACTCGATGCCTTCTCTCATTCTGGCCAGTCAATGAAGGCGGGTACATATGGATCTTCACGCAGTATGAATTTGAGCAAGGAAGATGCTCTAACTGGCCCTGGAAATGTCTTTAGTTCAGGAAATTCTACTGAGTTGAGAAAACAGAGATCCTGCTTAAACAGTAACGCAGCAAAATTGTCAAGATTTTCTAATTCAGTTGCAGTTCGAGGTGGTTCACAGCTTGATATGAGTGGAGATGGTAGTGTGAATTCACAGTGGCCGGAGGATTGCTTTAGCACTAGATATAGCCATCTAGCTGATGGTGAATCCAACCAATTGCTGGATGGACCCAAGTCTCCACACAGGAAAGACAGCCATCCTTCTGTGAAGGAGCCTGCCAAGGCTCATGTTCTGAAAAATAACCGCATCCACTATTCAGGACCATTGCTCTCTTCAGGACGAAATCTTGAAGAAATGCTCAAGGAGCATGAAAGACAAATCCAACAGGCTGTCCGCAAAGCTCGTTTGGATAAGGTCAAGATAAACAAATCTGACAGTGAGAATGGTCAAACTGAATCACTACTTCACCATGTGAGAAATCACAAGTGA 2211 0.4423 MGCICSKGTSSTEYVAENLNNNKVSKANRSSKHLSTPLRGEKVTIEADGGGNDATARLISNPSCDGTAGSTPTSSDEGEKNVETAGKPAKILVQTGLNVGIGNGGQGQPTVTRIVSITKGERGAQVLAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSSVYRARDLETNKIVALKKVRFTNMDPESVRFMAREIIVLRRLDHPNVMKLEGIITSRVSGSLYLVFEYMEHDLAGLAAIPGIKFTEAQIKCYMQQLLCGIEHCHSHGVLHRDIKGSNLLIDKNGNLKIGDFGLATLFQPSNGQLLTSRVVTLWYRPPELLLGATNYGGAVDLWSAGCILAELFAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQNPYKRVVSETFKDFPSSTLSLLEVLLAIEPEDRGTASLALQSEFFTTKPLPCDPSTLPKYPPSKEIDAKFRQEEARRRRAASIKGHEEESVRRGSRESKAVPAPDANAELRASIEKRQGQSKPKCNSEKYNAEEGDGSGFLIEPSREKALDAFSHSGQSMKAGTYGSSRSMNLSKEDALTGPGNVFSSGNSTELRKQRSCLNSNAAKLSRFSNSVAVRGGSQLDMSGDGSVNSQWPEDCFSTRYSHLADGESNQLLDGPKSPHRKDSHPSVKEPAKAHVLKNNRIHYSGPLLSSGRNLEEMLKEHERQIQQAVRKARLDKVKINKSDSENGQTESLLHHVRNHK 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2945 736 FunFam probable serine/threonine-protein kinase At1g54610 140 235 - -
Glsi11g2945 736 CDD STKc_CDK9_like 153 437 - -
Glsi11g2945 736 MobiDBLite consensus disorder prediction 46 83 - -
Glsi11g2945 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Glsi11g2945 736 MobiDBLite consensus disorder prediction 712 736 - -
Glsi11g2945 736 MobiDBLite consensus disorder prediction 502 523 - -
Glsi11g2945 736 MobiDBLite consensus disorder prediction 642 666 - -
Glsi11g2945 736 Pfam Protein kinase domain 153 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2945 736 Coils Coil 687 707 - -
Glsi11g2945 736 Gene3D Transferase(Phosphotransferase) domain 1 241 477 - -
Glsi11g2945 736 MobiDBLite consensus disorder prediction 650 666 - -
Glsi11g2945 736 MobiDBLite consensus disorder prediction 444 531 - -
Glsi11g2945 736 ProSitePatterns Protein kinases ATP-binding region signature. 159 182 IPR017441 GO:0005524
Glsi11g2945 736 SMART serkin_6 153 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2945 736 MobiDBLite consensus disorder prediction 456 491 - -
Glsi11g2945 736 ProSiteProfiles Protein kinase domain profile. 153 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2945 736 MobiDBLite consensus disorder prediction 56 79 - -
Glsi11g2945 736 Gene3D Phosphorylase Kinase; domain 1 148 240 - -
Glsi11g2945 736 PANTHER CELL DIVISION PROTEIN KINASE 151 443 - -
Glsi11g2945 736 FunFam probable serine/threonine-protein kinase At1g54610 236 477 - -
Glsi11g2945 736 SUPERFAMILY Protein kinase-like (PK-like) 146 445 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2945 Glsi-ChrGlsi11 24008895 24014029 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2945 145 581 Core Cell Cycle Gene Families AT5G10270 43.584 1.59e-117 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Glsi11g2945 Pkinase 1.9e-68 CL0016