Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2891 ATGAAGAGACAGAGAGTTATCGAAGGAATAGAGAGTTTCGACATAGCTAATTGTCTAATGCTGCTCTCTCATGCCCAAGATATTAGAAAGCCCCACAAAAGCGTTGAATTTGAGTGCAAGACTTGCAACCGCAAGTTCTCGTCGTTTCAGGCACTTGGGGGGCACAGGGCTAGCCACAAGAGGCCGAAACTAGATGGGGATGATGAACTCAAAGAACAGGCTAAGTCTCTGAGCTTAGCCACATCTAAACCCAAAGTGCACGAGTGCTCTATTTGTGGTCTGGAGTTCTCTCTGGGCCAAGCCCTGGGTGGCCACATGAGGAGGCATAGAGCTGACACCAACAAAGGCTTTTCTTCCATAAACAAGGTCGTCCTTCCAAAACTCTCAGTTCTAAAGAGATCCAATAGCAAAATTAAGGTTTTGTGCCTCGACCTGAACTTGACACCTCTCGAGAACGATTTGAAGCTATTGTTCGGAAAGATGGCACCTAAAGTTGATGCCTTCGTCTGA 510 0.4667 MKRQRVIEGIESFDIANCLMLLSHAQDIRKPHKSVEFECKTCNRKFSSFQALGGHRASHKRPKLDGDDELKEQAKSLSLATSKPKVHECSICGLEFSLGQALGGHMRRHRADTNKGFSSINKVVLPKLSVLKRSNSKIKVLCLDLNLTPLENDLKLLFGKMAPKVDAFV 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2891 169 PANTHER ZINC FINGER PROTEIN ZAT5 13 153 - -
Glsi11g2891 169 SMART c2h2final6 87 109 IPR013087 -
Glsi11g2891 169 SMART c2h2final6 37 59 IPR013087 -
Glsi11g2891 169 SUPERFAMILY beta-beta-alpha zinc fingers 37 109 IPR036236 -
Glsi11g2891 169 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Glsi11g2891 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Glsi11g2891 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Glsi11g2891 169 Gene3D Classic Zinc Finger 34 109 - -
Glsi11g2891 169 Pfam C2H2-type zinc finger 37 62 - -
Glsi11g2891 169 Pfam C2H2-type zinc finger 86 111 - -
Glsi11g2891 169 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2891 Glsi-ChrGlsi11 23051480 23051989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2891 1 166 C2H2 Transcription Factor Family AT2G37430 49.153 8.78e-50 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g2891 zf-C2H2_6 1.8e-10 CL0361