Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2861 ATGGAGGCTCAGTTCAATCACGGTCTCTTCGAGAGGCGCCCCTTCATAAGGTCCAAGACTCCCGCCGTTAAATGGGTTAAGGAATGGGTTCCCCAAGATGTTGTAGCAGCTGGAGGAAAATGCATGCTCTTAAGATGGGTGAAAGAGGATACCGTAAAGGCCTTGAAAGATACAGAAAAAGGCACATCAGTGCCTGAGCCAGAACCAGAACCAACTACTGAAGTGCTTTTTCTCTGCAGCTATGAAGGTTGTGGAAAGACATTCATAGATACTGGTTCTTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATTTGTTTGTCACTATGAGGGATGTGGAAAGAAATTTCTGGATAGCTCTAAGTTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGATTTTGTTTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCTTGGATTTCAACCTAAGGTCTCACATGAAAACACATTCGCAAGAAAACTATCATATCTGCCCATATGCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTCAAGAACCACATTGCATCTCATCATGAGAAGAATGCAGCAGTGGAGGTGCCAAGGTATACGCCACCATCAGAGAAGCAAACAAAATCTACAAAATCTTCTGGAGGGGCTTATGGTTCTGCATCATCTGATCGCCCTTATGCATGTCCTTACGAAGGGTGTGAAAAAGCCTACATCCATGAATACAAGCTTAAACTCCATTTGAAGAGGGAGCATCCTGGGCATATGTCTGATGAAAATGCAGAGAATGCTCAGGCTAACGCTGATAATGAAATGGATGAAGCAAGTGACCAAGAGGCTTATGTTGGGAAAAGATCCAATGGTAAAAGTCAGAAGCAGAGCAAGACTAAACCAAACTTGAAGTTGCCTCCTTCCAAAATTTCTCAACGCAAAGGTTCAACTCCTTCTGCCACTTCGAATGTAATTAAAAAACCTTGGCCGGTGAAAGATGAAACTTATGAGGAAGAAGATAGTGAAGAAACGGAAGAAGAGGATCGTGACAATGTCGAAGATGGTTGGAGATATGCAGGAAACCATGAAGATGATGATGAGGAAACAGAATATGAAGACTGA 1119 0.4307 MEAQFNHGLFERRPFIRSKTPAVKWVKEWVPQDVVAAGGKCMLLRWVKEDTVKALKDTEKGTSVPEPEPEPTTEVLFLCSYEGCGKTFIDTGSLRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYADCGKRYAHEYKLKNHIASHHEKNAAVEVPRYTPPSEKQTKSTKSSGGAYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAENAQANADNEMDEASDQEAYVGKRSNGKSQKQSKTKPNLKLPPSKISQRKGSTPSATSNVIKKPWPVKDETYEEEDSEETEEEDRDNVEDGWRYAGNHEDDDEETEYED 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2861 372 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Glsi11g2861 372 MobiDBLite consensus disorder prediction 192 227 - -
Glsi11g2861 372 FunFam Putative zinc finger protein 143 103 133 - -
Glsi11g2861 372 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 354 - -
Glsi11g2861 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Glsi11g2861 372 Gene3D Classic Zinc Finger 163 195 - -
Glsi11g2861 372 Gene3D Classic Zinc Finger 103 133 - -
Glsi11g2861 372 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Glsi11g2861 372 FunFam Zinc finger protein 410 134 161 - -
Glsi11g2861 372 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Glsi11g2861 372 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Glsi11g2861 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Glsi11g2861 372 Gene3D Classic Zinc Finger 77 102 - -
Glsi11g2861 372 Gene3D Classic Zinc Finger 134 161 - -
Glsi11g2861 372 Gene3D Classic Zinc Finger 203 273 - -
Glsi11g2861 372 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Glsi11g2861 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Glsi11g2861 372 MobiDBLite consensus disorder prediction 256 372 - -
Glsi11g2861 372 MobiDBLite consensus disorder prediction 285 323 - -
Glsi11g2861 372 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Glsi11g2861 372 MobiDBLite consensus disorder prediction 334 349 - -
Glsi11g2861 372 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Glsi11g2861 372 SMART c2h2final6 136 160 IPR013087 -
Glsi11g2861 372 SMART c2h2final6 77 101 IPR013087 -
Glsi11g2861 372 SMART c2h2final6 229 254 IPR013087 -
Glsi11g2861 372 SMART c2h2final6 106 130 IPR013087 -
Glsi11g2861 372 SMART c2h2final6 166 190 IPR013087 -
Glsi11g2861 372 Coils Coil 260 280 - -
Glsi11g2861 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 259 IPR013087 -
Glsi11g2861 372 FunFam zinc finger transcription factor YY1 163 194 - -
Glsi11g2861 372 FunFam Zinc finger transcription factor YY1 204 271 - -
Glsi11g2861 372 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Glsi11g2861 372 MobiDBLite consensus disorder prediction 205 222 - -
Glsi11g2861 372 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Glsi11g2861 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Glsi11g2861 372 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2861 Glsi-ChrGlsi11 22424118 22430144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2861 10 358 C2H2 Transcription Factor Family AT4G06634 62.466 1.36e-149 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g2861 zf-C2H2 0.0082 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2861 11 22424118 22430144 Glsi11g2861 11 22424118 22430144 ECH