Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2823 ATGGCTATACATAAAAACCTCCGACTTATCACCTACTCACAAGATATTGTAGGTGGACAGCCAGTTTTTGTTTCTTCAAATTGTATGCCTATCAAGGCTTTGAAATTTGAACCTGCAGGACATTCCTTCCATTCTGCTGCACTTAAACTTCTTGGTGTTGAGGAAGATAATGCAGATGTTGACGATAAAAAAGTGGTTGATGATAAGGAACAGATGTATTTGCCATCATCTGATTCTTATAGCAGCAAGAGTAAAAAGAAATCTGGTTCCGGAGACAAGCAACAAGATCACTATGCATTGCTGGGTTTGGCCCATCTAAGATACCTTGCTAATGAGGATCAAATACGTAAAAGCTATCGTGAAACTGCCTTGAGGTATCATCCTGACAAACAGGCTGCTCTACTTCTTGCTGAGGAGACTGAAGCTGCAAAACAGGCAAAGAAGGATGAGATAGAAAATCATTTCAAGGCAATCCAGGAAGCATATGAAGTGTTGATTGATCCTGTGAAGAGAAGAAATTATGATTCCACAGATGAGTTCGATGATGAGATTCCCACTGACTGTGCCCCACAAGACTTCTTCAAGGTGTTTGGTCCCGCTTTTATGAGGAATGGAAGGTGGTCAGTTAATCAACCAGTTCCATCTCTAGGTGATAACAATACTCTATTAAAAGAAGTTGATAATTTCTACAATTTCTGGTACACCTTTAAAAGTTGGAGGGAGTTTCCTCATACTGATGAATTTGATCTTGAGCAAGCTGAATCTCGAGACCATAGGAGGTGGATGGAAAGGCAGAATGCAAAATTGTCAGAAAAAGCTAGGAAGGAAGAATCTGCACGGATACGTGCTCTTGTTGAGAATGCTCATAAGAGAGACCCTAGAATATTAAGGAGGAAGGAAGAGGAAAGAGCTGAGAAGCAAAGAAAAAAGGAGGCTAAGTTTCTTGCAAAGAAGATGCAGGAAGAAGAAGCTGCCAGAATTGCAGAAGAAGAGAGGCAACGGAAGGAGGAGGAAGAGAAACGAGCTGCAGAAGCTGCTGTACAACAGAAGAAGGTGAAGGAGAAAGAGAAAAAACTCTTGCGGAAAGAGCGTGCTCATCTTCGAACACTTTCAGGACCTATTTTGTCACAGCGTCGACTTGACATATCTGAGGATGATGTAGAAAGTCTTTGCATGTCACTTGATATTGAGCAGCTGAGGAGTTTGTGTGAGAAAATGGATGGCAAAGAGGTGTTAGAGCAAGCAGAAGTTCTCAGAGATGCACAGGGTCGCAAGAAAGATTTGGATAATAAGAAAGATGAGCCAACTGATAGACAGAATGGTTCTGTAAGGGCTAATGGCAGTGTCTCACTAGGCAACTTAGAGAAAAAGGAGAAACCTTGGAGTAAAGAAGAGATTGAGCTACTGAGAAAGGGTATGCAAAAATATCCCAAAGGAACTTCACGGAGGTGGGAGGTTATTTCAGAGTACATTGGTACTGGAAGATCAGTGGAAGAAATTATGAAGGCAACAAAAACAGTTCTCCTCCAGAAGCCTGATTCTTCCAAATCTTTTGATGCATTTCTTGAGAAAAGGAAACCTATAATATCAATTGCGTCTCCTCTTTCAACCAGAGAAGAATTAGAAGGGGAGTCAGCTCCTGGGAGGCGTGAAAATAATGCTGCCTCAACAACAAATAACGTGGAAGACTCTAATAGCAAAAGTGCTGACAACCAGAACACTACTGGTTCAGTTACTGTTAATGGAGTATCCTCTAGTTCAGAGCAAGATGTGTGGTCCGCTGTGCAGGAAAGAGCACTGGTTCAGGCTTTAAAAGCCTTCCCAAAGGAAACTAGCCAGAGATGGGAACGAGTAGCAGCAGCTGTTCCTGGAAAGACTGTGAATCAGTGCAAGAAAAAATTTGCAATGATCAAGGAGAACTTCAGAAACAAGAAAAGTGCCGTTTAA 1947 0.4176 MAIHKNLRLITYSQDIVGGQPVFVSSNCMPIKALKFEPAGHSFHSAALKLLGVEEDNADVDDKKVVDDKEQMYLPSSDSYSSKSKKKSGSGDKQQDHYALLGLAHLRYLANEDQIRKSYRETALRYHPDKQAALLLAEETEAAKQAKKDEIENHFKAIQEAYEVLIDPVKRRNYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPVPSLGDNNTLLKEVDNFYNFWYTFKSWREFPHTDEFDLEQAESRDHRRWMERQNAKLSEKARKEESARIRALVENAHKRDPRILRRKEEERAEKQRKKEAKFLAKKMQEEEAARIAEEERQRKEEEEKRAAEAAVQQKKVKEKEKKLLRKERAHLRTLSGPILSQRRLDISEDDVESLCMSLDIEQLRSLCEKMDGKEVLEQAEVLRDAQGRKKDLDNKKDEPTDRQNGSVRANGSVSLGNLEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSSKSFDAFLEKRKPIISIASPLSTREELEGESAPGRRENNAASTTNNVEDSNSKSADNQNTTGSVTVNGVSSSSEQDVWSAVQERALVQALKAFPKETSQRWERVAAAVPGKTVNQCKKKFAMIKENFRNKKSAV 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2823 648 Coils Coil 318 365 - -
Glsi11g2823 648 ProSiteProfiles Myb-like domain profile. 584 638 IPR001005 -
Glsi11g2823 648 Gene3D - 454 511 - -
Glsi11g2823 648 Pfam DnaJ domain 96 175 IPR001623 -
Glsi11g2823 648 SMART sant 588 640 IPR001005 -
Glsi11g2823 648 SMART sant 457 510 IPR001005 -
Glsi11g2823 648 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 9 647 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Glsi11g2823 648 CDD SANT 592 638 IPR001005 -
Glsi11g2823 648 ProSiteProfiles SANT domain profile. 587 642 IPR017884 -
Glsi11g2823 648 Pfam Myb-like DNA-binding domain 591 636 IPR001005 -
Glsi11g2823 648 Pfam Myb-like DNA-binding domain 459 500 IPR001005 -
Glsi11g2823 648 SUPERFAMILY Chaperone J-domain 94 202 IPR036869 -
Glsi11g2823 648 MobiDBLite consensus disorder prediction 533 584 - -
Glsi11g2823 648 SUPERFAMILY Homeodomain-like 459 503 IPR009057 -
Glsi11g2823 648 MobiDBLite consensus disorder prediction 550 584 - -
Glsi11g2823 648 Coils Coil 137 157 - -
Glsi11g2823 648 Gene3D - 582 648 - -
Glsi11g2823 648 Gene3D DnaJ domain 92 210 IPR036869 -
Glsi11g2823 648 FunFam Myb family transcription factor 586 646 - -
Glsi11g2823 648 PRINTS DnaJ domain signature 48 66 IPR001623 -
Glsi11g2823 648 PRINTS DnaJ domain signature 119 134 IPR001623 -
Glsi11g2823 648 PRINTS DnaJ domain signature 150 170 IPR001623 -
Glsi11g2823 648 ProSiteProfiles Myb-like domain profile. 453 508 IPR001005 -
Glsi11g2823 648 SMART dnaj_3 95 170 IPR001623 -
Glsi11g2823 648 MobiDBLite consensus disorder prediction 74 93 - -
Glsi11g2823 648 CDD DnaJ 96 167 IPR001623 -
Glsi11g2823 648 CDD SANT 460 502 IPR001005 -
Glsi11g2823 648 SUPERFAMILY Homeodomain-like 590 645 IPR009057 -
Glsi11g2823 648 ProSitePatterns Nt-dnaJ domain signature. 155 174 IPR018253 -
Glsi11g2823 648 MobiDBLite consensus disorder prediction 422 439 - -
Glsi11g2823 648 MobiDBLite consensus disorder prediction 292 311 - -
Glsi11g2823 648 ProSiteProfiles dnaJ domain profile. 96 178 IPR001623 -
Glsi11g2823 648 MobiDBLite consensus disorder prediction 422 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2823 Glsi-ChrGlsi11 21461845 21463791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2823 97 296 C2H2 Transcription Factor Family AT1G74250 29.289 1.98e-18 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi11g2823 DnaJ 5.6e-17 CL0392