Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2821 ATGTTTCGCTATGGGCAACACCGCAACAGTTGTACACCTCCCTTTATGAAAGGACTCAAGTCATCCAATGGGAAACATCATATGGATACTAGTGATCCTTATGTCTCTGTCGTTCTAGCAGGAGCCACTGTAGCTCAAACTCGAGTGGTTCCAAACAGCGAGAACCCTTCATGGGATGAGAATTTTATTGTCCCAGTCGCTCACCCTGCTCAGAAAGTGGAGTTTATTGTGAAAGACGATGATGTTCTAGGGGCTGAGGTCATTGGAGTAGTAGAGATACCTGTTCAAAAGCTTTTGTCAGGAACTACTATTAATGATTGGTTTACAATCGTTGGTCAGTATTCAACAGGCGTACAACCTCATCCTGAGTTGCATATCTCTATTCAGTATAAGCCAATTGGAGAAAACCCTGTATCCGGAAAAGATTCTATAGGTATTCCTAACACATATTTCCCTCTACGCAAAGGAGGGATTGTGACTCTTTATCAAGATGCACATGTACCGGGTGCTATTCTACCTGAAATTCCACTTGAGAGTGGAAAAGTGTTTCATCAGGGTAAATGTTGGGAGGATATTTGCCATGCAATTTTGGAAGCTCAAAACCTAATATACATTATAGGATGGTCCGTTTACCACCCTATAAAGCTTGTCAGAGAACCAACAAAACCCTTACCTTCTGGCGGAGAGCTTCCACTTGGAGAGTTGTTGAAATACAAGTCACAAGAAGGGGTCCGCGTGGTTATGCTGATCTGGGATGACAAAACTTCGCATGACAAAGTTTTTTTGAAAACAGAAGGTGTCATGCAAACCCATGATGAAGAAACTAAGAAATTTTTTAAACACTCCACTGTTCATTGTGTGCTTGCTCCACGTTATGCAAGCAATAAGCTCAGTATTTTCAAGCAACAGGTTGTGGGAACCCTTTTTACACATCATCAAAAGTGTGTCCTTCTTGACACTCAAGCTACTGAGAATAAACGGAAAATAACTGCTTTTATAGGTGGTCTGGATCTATGTGATGGCAGATATGATACTCCTGAGCATCGACTCTTTGCTGATCTAGATACTGTCTTTCAAAATGATATACATAATCCCGTTTTTCCAGCAAATTTCTGTGGACCAAGGGAACCATGGCATGACTTACATTGTAAAATTGAGGGTCCGGCTGCATATGATATATTGACCAATTTTGAACAAAGATGGAAGAAAGCCAAAAAATGGCGTGACTTCAGGCTAAAAAAGGTGACAAATTGGCACGATGATGCTTTGCTGAGACTAGATCGTATTTCATGGATTCTCACTCCATCCTCTGGTGCTGCTGATGACGAATCTGTTCATGTAACTAATGAAAATGATCCAGAGAGTTGGCATGTGCAGGTTTTTCGGTCCATAGATTCAGGATCAGTGAAGGGTTTTCCAAAGGATATTGACCAAGCTAAGTCTCAGCATCTTCTCTGTGGGAAAAACCTGAAAGTAGACAAAAGCATCCATACTGCTTACGTAAAAGCAATAAGATCGGCTCAACACTTTGTATATATAGAGAATCAGTATTTTCTGGGATCCTCGTATTATTGGCCTTCATACGAAAATGCAGGTGCAGATAACTTGGTTCCCATGGAGCTGGCTTTGAAAATTGTTGGCAAGATCAAAGCAAATGAACGCTTTTCTGTGTACGTTGTTATACCAATGTGGCCTGAGGGGCTTCCAACTAGTAATGCTGTGCAGGAAATCTTGTTCTGGCAGGGACAGACAATGGCTATGATGTACAGTATTATTGCAGATGGCCTTAAAAAAGAAGGTATCTCTGATAAGTATCATCCTCAAGATTATCTCAATTTTTACTGCCTTGGAAAGCGTGAAGCTCAATCTGCCAAAAGTTTACCAATATCATCGCAGTCATCTGAAAACCGTGCGTTGGCATCAGTTAACAAATACAGACGTTTTATGATTTATGTTCATGCCAAAGGAATGATAGTTGATGATCAATTTGTAATCATGGGATCTGCAAATATTAACCAAAGATCCTTGGACGGTTCAAGGGACACAGAAATTGCTATGGGTGCTTATCAGCCAAAATATACATGGGCAGTAAAGAAATCTCATCCACATGGTCAGGTATACGGTTACCGAATGTCACTGTGGGCTGAGCACCTTAGTTCTCTGGAGGATGTTTTCAGGGAACCATATAGCCTGGAGTGTGTTCGACGTGTGAATGAAATTGCCAAGAATAACTGGGACGCATATGTATCTGAGGAATGGAAGGATATGAGGGGACACCTGATGCAGTATCCAGTTCAGGTTGGTGGGGATGGTAAAGTCAGTGCACTGCCAGGTTTTGAATGCTTTCCTGATTTTGGGGGTAAAATTCTTGGATCATCCAACTCTCTTCCAGATACCCTAACCACATAA 2409 0.4147 MFRYGQHRNSCTPPFMKGLKSSNGKHHMDTSDPYVSVVLAGATVAQTRVVPNSENPSWDENFIVPVAHPAQKVEFIVKDDDVLGAEVIGVVEIPVQKLLSGTTINDWFTIVGQYSTGVQPHPELHISIQYKPIGENPVSGKDSIGIPNTYFPLRKGGIVTLYQDAHVPGAILPEIPLESGKVFHQGKCWEDICHAILEAQNLIYIIGWSVYHPIKLVREPTKPLPSGGELPLGELLKYKSQEGVRVVMLIWDDKTSHDKVFLKTEGVMQTHDEETKKFFKHSTVHCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVLLDTQATENKRKITAFIGGLDLCDGRYDTPEHRLFADLDTVFQNDIHNPVFPANFCGPREPWHDLHCKIEGPAAYDILTNFEQRWKKAKKWRDFRLKKVTNWHDDALLRLDRISWILTPSSGAADDESVHVTNENDPESWHVQVFRSIDSGSVKGFPKDIDQAKSQHLLCGKNLKVDKSIHTAYVKAIRSAQHFVYIENQYFLGSSYYWPSYENAGADNLVPMELALKIVGKIKANERFSVYVVIPMWPEGLPTSNAVQEILFWQGQTMAMMYSIIADGLKKEGISDKYHPQDYLNFYCLGKREAQSAKSLPISSQSSENRALASVNKYRRFMIYVHAKGMIVDDQFVIMGSANINQRSLDGSRDTEIAMGAYQPKYTWAVKKSHPHGQVYGYRMSLWAEHLSSLEDVFREPYSLECVRRVNEIAKNNWDAYVSEEWKDMRGHLMQYPVQVGGDGKVSALPGFECFPDFGGKILGSSNSLPDTLTT 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2821 802 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 307 342 IPR001736 GO:0003824
Glsi11g2821 802 SMART C2_3c 16 107 IPR000008 -
Glsi11g2821 802 FunFam Phospholipase D delta 179 422 - -
Glsi11g2821 802 Pfam Phospholipase D C terminal 722 792 IPR024632 -
Glsi11g2821 802 PANTHER PHOSPHOLIPASE D 20 792 IPR015679 -
Glsi11g2821 802 MobiDBLite consensus disorder prediction 1 27 - -
Glsi11g2821 802 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 648 675 IPR001736 GO:0003824
Glsi11g2821 802 Pfam C2 domain 28 110 IPR000008 -
Glsi11g2821 802 Gene3D Endonuclease Chain A 449 703 - -
Glsi11g2821 802 Gene3D C2 domain 16 139 IPR035892 -
Glsi11g2821 802 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 27 133 IPR035892 -
Glsi11g2821 802 PIRSF PLD_plant 6 802 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Glsi11g2821 802 SMART pld_4 648 675 IPR001736 GO:0003824
Glsi11g2821 802 SMART pld_4 307 342 IPR001736 GO:0003824
Glsi11g2821 802 Pfam Phospholipase D Active site motif 308 342 IPR001736 GO:0003824
Glsi11g2821 802 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Glsi11g2821 802 SUPERFAMILY Phospholipase D/nuclease 147 409 - -
Glsi11g2821 802 SUPERFAMILY Phospholipase D/nuclease 494 733 - -
Glsi11g2821 802 Gene3D Endonuclease Chain A 179 423 - -
Glsi11g2821 802 Pfam PLD-like domain 502 684 IPR025202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2821 Glsi-ChrGlsi11 21444881 21452754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2821 30 801 Phospholipase D Gene Family (Wang group) AT4G00240 56.154 0.0 901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2821 11 21444881 21452754 Glsi11g2821 11 21444881 21452754 ECH