LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g2814	ATGGGAACCGGCAAGAGGAACACGGAGATCAAGAAGATAGAGAGCAAATCAGCGAGGTATGTCTGCTTCTCAAAGCGGCGCGAGGGTTTGTTCAAGAAGGCTCAACAGTACCACACAGTCTCCGGGTCCCACATTGCGGTTCTTGTCTTGTCCCCCTGTGGCAGACCCTACGTCCATGGCTCCCCTTCCTTCGACCCCATTGTTGATAAATTCCTTCAAAACTCCACCACGACGACCCCCACCACCGGTGACTCCGTTTCGGGACCCACCGTTTCTGACTCTGCCTCCACTGACGTGGGTTTGAGAGAGTGCGTGGAGGACATTAAGGTGGAAGAGTGTGAGAGTTTGGAGGAGCTGGTGGAGATGAAGAGGAAGCTGGAAGAGATTAGAGGAATGGTGGTCCAGAGTTTTGTGGACTCATTCATCTTGGAAGATTTCTAG	441	0.5261	MGTGKRNTEIKKIESKSARYVCFSKRREGLFKKAQQYHTVSGSHIAVLVLSPCGRPYVHGSPSFDPIVDKFLQNSTTTTPTTGDSVSGPTVSDSASTDVGLRECVEDIKVEECESLEELVEMKRKLEEIRGMVVQSFVDSFILEDF	146

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g2814	146	PANTHER	MADS BOX PROTEIN	7	133	-	-
	Glsi11g2814	146	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	12	58	IPR002100	GO:0003677\|GO:0046983
	Glsi11g2814	146	SMART	madsneu2	3	62	IPR002100	GO:0003677\|GO:0046983
	Glsi11g2814	146	SUPERFAMILY	SRF-like	4	79	IPR036879	GO:0003677\|GO:0046983
	Glsi11g2814	146	ProSiteProfiles	MADS-box domain profile.	3	63	IPR002100	GO:0003677\|GO:0046983
	Glsi11g2814	146	MobiDBLite	consensus disorder prediction	75	98	-	-
	Glsi11g2814	146	Gene3D	-	15	82	IPR036879	GO:0003677\|GO:0046983
	Glsi11g2814	146	PRINTS	MADS domain signature	40	61	IPR002100	GO:0003677\|GO:0046983
	Glsi11g2814	146	PRINTS	MADS domain signature	25	40	IPR002100	GO:0003677\|GO:0046983
	Glsi11g2814	146	PRINTS	MADS domain signature	5	25	IPR002100	GO:0003677\|GO:0046983
	Glsi11g2814	146	MobiDBLite	consensus disorder prediction	75	97	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g2814	Glsi-ChrGlsi11	21389456	21389896	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g2814	4	73	Type I MADS-box Gene Family	AT2G34440	35.714	2.26e-15	67.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Glsi11g2814		SRF-TF	9.9e-18	No_clan