LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g2810	ATGGAGAGGAATTTTAGTTCATATAATCATCACATGGCCTCTAGCTTGAAGAACGGTGACCAGAAACACCAGCACGATCACACAGCACAGTCTCATCTTGAAGAAGATAACATGTCTCCATCTTTCAATCTGCGGAATATCTCAAAGCTCATCCTTCCACCTCTGGGTGCTTCAAGTTATAACCAGAACCCAGTAGACTCAAAAGGGTGGATCATATCTCCTATGGATTCAAAATACAGGTGGTGGCAGGGTTTCATGGTGCTTCTGGTGGGTTATTCGGCGTGGGTTTATCCCTTTGAGGTCGCTTTCCTGCACTCCTCTCTAAACAGGGAAGTGTACATTGTGGACAATGTCGTTGATATTTTCTTCGCCGTTGATATTGTTCTCACATTCTTCGTAGCTTTCATTGATCCAAGAACTCAGCTATTAGTTCGAAACTCCAAAACGATTGCTACCAGGTACCTTTCAACATGGTTCGTGATGGACGTAGCATCAACAATTCCATACGAGGCAACAGGGTATTTGATTACAGGCAAACACAAAGTGGGCCTTGTTTACTACCTTCTGGGCCTGCTCAGATTTTGGCGACTCAGGCGCGTCAAGCAATTCTTCACCAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGATCCGATGTGCTAGGCTTCTCTCTGTGACACTATTTTCAGTTCATTGTGCTGGGTGCCTCTACTACCTACTAGCCGATCGCTATCCTCATCAAGGAAAGACATGGATTGGAGCAGTGATCCCAAATTTCCGACAGACAAGCCTGAGGATCAGATACATCTCAGCCATGTACTGGTCCATCACCACCATGACCACCGTCGGCTACGGCGACCTCCATGCTGTGAACACCCAGGAAATGATATTCATCATCTTCTACATGCTCTTCAACCTTGGCCTAACTGCTTACTTGATTGGCAACATGACAAACCTAGTTGTTGAAGGAACTCGTCGTACCATGGAATTTAGAAATAGCATTGAAGCGGCGTCAAATTTTGTGGGCCGAAACCGTTTGCCTCCAAGGTTAAGAGAGCAGATCCTGGCTTATATGTGTTTGAGATTTAAGGCTGAGAGCTTGAATCAGCATCAGCTTATTGAACAGCTACCAAAATCCATTTGCACAAGCATCTGCCAGCATTTGTTCTTTCCAACTGTCGAGAAAGTCTATCTTTTCAAAGATGTCTCGAGAGAAATTCTTTTGTCCTTGGTTGCAAAAATGAAGGCAGAGTATTTACCACCCAGGGAGGATGTGATCATGCAAAATGAATCTCCAGATGATGTCTACATTATAGTATCAGGAGAAGTGGAGATCATTGATTGTGTAATGGAGAAAGAGAAACTTTTAGGGACTTTACGAACAGGGGACATGTTTGGAGAAGTTGGTGCGCTTTGTTGCAGACATCAGAACTTTACCTACAGAACCAAGACTCTCACACAGCTCTTGAGGCTCAAAACCAATGCTCTCATAGAAGCAATGCAGACTAAAAAAGAAGACAATATACAAATACTCAAGAACTTCCTGCAGCATTTCAAGCAACTGAAGGATCTGAGTATTAGAGATTTAATGGTGGAGAGTGGAGAAGATGAGGACCCAAACATGGCTGTGAATTTGCTAACTGTGGCTAGTACAGGCAATGCTGCTTTTCTTGAGGAGCTACTCAAGGCAGGTTTAGATCCTGACATTGGAGACTCAAAAGGAAAAACCCCATTGCACATAGCTGCAACAAATGGCCATGAACAGTGTGTAAAGGTCTTGCTAAGGCATGCATGCAACCTACTTATAAGAGACATCAACGGAAACACTGCATTATGGGATGCTATAGAATCAAAACACCATTCCATATTCCGAATCCTCTACCAACTTTCCGCCCTCTCTGATCCACAAACAGGAGGTGATCTCCTATGCACAGCAGCAAAAAGAAACGATCTAATAGTGATGAATGAGCTTCTAAAGCAAGGGTTGAACGTAGACTCGAAAAATCACCATGGTTTAACAGCAATCCAGATTGCCATGGCAGAAAACCATGTGGAAATGGTTCAGCTTCTTGTCATCAATGGAGCAGATGTTTCTGGCATTCATACCCATAACTTCTCTGCTTCAGCTTTGAACGACATGCTGCGAAAGCGCGAAAGCGGACATCAGATCATGGTTCATGAAAGTACAAACACTGAGTTTGTGTCAAGGGAATGTGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGAGTAAGAGTTGGGGAAGATGTAATAGAGGTAAGTGTCCAAGAGTAAGTATATATAGAGGTCATCCTGTAATGAGAAGAGAGAAAGGTTGCAGGGAAGCTGGGAAGCTCATCAGGATTCCTAATTCATATGAGGAGCTCAAGAGAATTGCAGGTGAAAAATTTGGGTTTGAAGCAAAAGATGCAATGGTGACAAATGAAGAAGGAGCAGAAATAGACTCCATTGATGTGATCAGAGATAACGATAAGCTTTTCATTGTTGAATAG	2511	0.4333	MERNFSSYNHHMASSLKNGDQKHQHDHTAQSHLEEDNMSPSFNLRNISKLILPPLGASSYNQNPVDSKGWIISPMDSKYRWWQGFMVLLVGYSAWVYPFEVAFLHSSLNREVYIVDNVVDIFFAVDIVLTFFVAFIDPRTQLLVRNSKTIATRYLSTWFVMDVASTIPYEATGYLITGKHKVGLVYYLLGLLRFWRLRRVKQFFTRLEKDIRFSYFWIRCARLLSVTLFSVHCAGCLYYLLADRYPHQGKTWIGAVIPNFRQTSLRIRYISAMYWSITTMTTVGYGDLHAVNTQEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLREQILAYMCLRFKAESLNQHQLIEQLPKSICTSICQHLFFPTVEKVYLFKDVSREILLSLVAKMKAEYLPPREDVIMQNESPDDVYIIVSGEVEIIDCVMEKEKLLGTLRTGDMFGEVGALCCRHQNFTYRTKTLTQLLRLKTNALIEAMQTKKEDNIQILKNFLQHFKQLKDLSIRDLMVESGEDEDPNMAVNLLTVASTGNAAFLEELLKAGLDPDIGDSKGKTPLHIAATNGHEQCVKVLLRHACNLLIRDINGNTALWDAIESKHHSIFRILYQLSALSDPQTGGDLLCTAAKRNDLIVMNELLKQGLNVDSKNHHGLTAIQIAMAENHVEMVQLLVINGADVSGIHTHNFSASALNDMLRKRESGHQIMVHESTNTEFVSRECEEEEEEEEEESKSWGRCNRGKCPRVSIYRGHPVMRREKGCREAGKLIRIPNSYEELKRIAGEKFGFEAKDAMVTNEEGAEIDSIDVIRDNDKLFIVE	836

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g2810	836	SUPERFAMILY	Voltage-gated potassium channels	74	322	-	-
	Glsi11g2810	836	CDD	CAP_ED	399	512	IPR000595	-
	Glsi11g2810	836	Pfam	Ankyrin repeats (3 copies)	550	629	IPR002110	GO:0005515
	Glsi11g2810	836	PRINTS	EAG/ELK/ERG potassium channel family signature	116	126	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Glsi11g2810	836	PRINTS	EAG/ELK/ERG potassium channel family signature	269	286	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Glsi11g2810	836	PRINTS	EAG/ELK/ERG potassium channel family signature	295	306	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Glsi11g2810	836	PRINTS	EAG/ELK/ERG potassium channel family signature	313	322	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Glsi11g2810	836	PRINTS	EAG/ELK/ERG potassium channel family signature	127	136	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Glsi11g2810	836	FunFam	Potassium channel KAT3	81	323	-	-
	Glsi11g2810	836	Pfam	Cyclic nucleotide-binding domain	419	503	IPR000595	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g2810	Glsi-ChrGlsi11	21329142	21340097	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g2810	1	579	Ion Channels	AT4G22200	72.556	0.0	862

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi11g2810	11	21329142	21340097	Glsi11g2810	11	21329142	21340097	ECH

Showing 1 to 1 of 1 entries