Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2807 ATGGATTTCCAAACATTCAACCAAGTTCATGATTCAAATAGCAGAAGGGTCATTGGTTTGAGAATTCCAAAAGAATTCGACTTGAATTTGGTGCCAGAAACTACAGAAAGTGACGATGAGTTTCGAGTTTCACAAGTTGATATAAACTCTTCGCAGGCTTCTCAGAATCCCACTGAAGAAGTGAACACAGTTTCAAATGGTTTGGGTGCTGGAGACCCTGCTCTCCCCAGCAACCCTCCAAACAACACAACTTCAATGCAACCCTTATATTCCTCTCACGATAACAGGAGGAGGGTTGACCCTGCAGGCAACGGAAACTCTTTGGACTGTGACACCGGAAGGACCCTGTGCCCTCGCCGGCTCGATGTGAACGACAGTGACCGCCGTAGAGTTTGCACAAATTATCACTGCCGGACCAGAAACACTCCCATGTGGCGCAAGGGGCCCCTGGGTCCAAAGACGCTGTGCAATGCGTGCGGAATTCAGTATAAGAAGCAGGTGGCAAGCAGAGGAAGCAACCGCTAA 525 0.4876 MDFQTFNQVHDSNSRRVIGLRIPKEFDLNLVPETTESDDEFRVSQVDINSSQASQNPTEEVNTVSNGLGAGDPALPSNPPNNTTSMQPLYSSHDNRRRVDPAGNGNSLDCDTGRTLCPRRLDVNDSDRRRVCTNYHCRTRNTPMWRKGPLGPKTLCNACGIQYKKQVASRGSNR 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2807 174 Pfam GATA zinc finger 132 166 IPR000679 GO:0006355|GO:0043565
Glsi11g2807 174 Gene3D - 125 174 IPR013088 GO:0006355|GO:0008270
Glsi11g2807 174 PANTHER GATA TRANSCRIPTION FACTOR 44 165 - -
Glsi11g2807 174 ProSiteProfiles GATA-type zinc finger domain profile. 136 174 IPR000679 GO:0006355|GO:0043565
Glsi11g2807 174 MobiDBLite consensus disorder prediction 48 65 - -
Glsi11g2807 174 MobiDBLite consensus disorder prediction 48 90 - -
Glsi11g2807 174 SMART GATA_3 128 173 IPR000679 GO:0006355|GO:0043565
Glsi11g2807 174 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 127 170 - -
Glsi11g2807 174 CDD ZnF_GATA 131 174 IPR000679 GO:0006355|GO:0043565
Glsi11g2807 174 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2807 Glsi-ChrGlsi11 21280187 21282966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2807 132 166 C2C2-Gata Transcription Factor Family AT3G20750 68.571 4.94e-14 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi11g2807 GATA 8.1e-15 CL0167